| MirGeneDB ID | Asu-Mir-2-o11c |
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| Family name |
MIR-2 (all species) |
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| Seed |
AUCACAG |
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| Species |
Large roundworm (Ascaris suum) |
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| MiRBase ID |
asu-mir-43c-2
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| Paralogues |
Asu-Mir-2-o6
Asu-Mir-2-o7a
Asu-Mir-2-o7b
Asu-Mir-2-o8
Asu-Mir-2-o9
Asu-Mir-2-o10
Asu-Mir-2-o11a
Asu-Mir-2-o11b
Asu-Mir-2-o11d
Asu-Mir-2-P11
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| Orthologues |
Cbr-Mir-2-P11
Cel-Mir-2-P11
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| Node of Origin (locus) |
A. suum
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| Node of Origin (family) |
Protostomia
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Genome context
(ASU_PRJNA80881_plustraces) |
Scaffold1171: 26596-26653 [+]
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Precursor
(pre-Mir +30nt flank) |
UACCGGCGAAACCAGGUGUGUACAGCGGCGCGUGGCAAAGAUACUGCGAUGCGCCGCGUUACAUCGUAUCACAGUUCUUUGUCACCCUUUGCCUUACGCAUAUUUUCCACAAAACCAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UACCGGCGAAACCAGGU--| CA CGC U C CCGCG
GUGUA GCGG GUGGCAAAGA ACUG GAUGCG \
CGCAU CGUU CACUGUUUCU UGAC CUAUGC U
UACCAAAACACCUUUUAUA^ UC UCC - A UACAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14) |
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Tissue expression
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| 0h |
11 |
12 |
24 |
46 |
64 |
6d |
7d |
8d |
96 |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
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| Star sequence |
Asu-Mir-2-o11c_5p* (predicted) |
| mirBase accession | MIMAT0022671 |
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| Sequence |
0- CGUGGCAAAGAUACUGCGAUGCG -23
Get sequence
|
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| Mature sequence |
Asu-Mir-2-o11c_3p |
| mirBase accession | MIMAT0021454 |
|---|
| Sequence |
36- UAUCACAGUUCUUUGUCACCCU -58
Get sequence
|
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