MirGeneDB 3.0
MirGeneDB ID

Asu-Mir-2-o8

Family name MIR-2 (all species)
Seed AUCACAG
Species Large roundworm (Ascaris suum)
MiRBase ID asu-mir-2b
Paralogues Asu-Mir-2-o6  Asu-Mir-2-o7a  Asu-Mir-2-o7b  Asu-Mir-2-o9  Asu-Mir-2-o10  Asu-Mir-2-o11a  Asu-Mir-2-o11b  Asu-Mir-2-o11c  Asu-Mir-2-o11d  Asu-Mir-2-P11 
Orthologues Aae-Mir-2-P8  Aga-Mir-2-P8  Dan-Mir-2-P8  Dme-Mir-2-P8-v1  Dme-Mir-2-P8-v2  Dmo-Mir-2-P8  Dsi-Mir-2-P8  Dya-Mir-2-P8  Gpa-Mir-2-P8  Gsp-Mir-2  Hme-Mir-2-P8  Ple-Mir-2  Tca-Mir-2-P8 
Node of Origin (locus) A.suum
Node of Origin (family) Protostomia
Genome context
(ASU_PRJNA80881_plustraces)		 Scaffold287: 267253-267310 [-]
Clustered miRNAs
(< 50kb from Mir-2-o8)		 Mir-791 Scaffold287: 265477-265534 [-]
Mir-2-o8 Scaffold287: 267253-267310 [-]
Mir-2-P11 Scaffold287: 267429-267487 [-]
Mir-279-o24 Scaffold287: 267836-267891 [-]
Precursor
(pre-Mir +30nt flank)
CCGUGACCCGUUGAAUUGUGAACUCUGGCGUGCUUAAUCGUUCAGUGAUUCAUAGUGAAUAGCUUGUAUCACAGUUCGAUUUGGCCCGCUAGUGUCACUGCUGCGUCCUCACGUAAUU
Get precursor sequence
Structure
        10           20        30        40        50        
CCGUGACCCGUUGAAUU---|   ACU      U   U     UUCA     U  UAGUG 
                    GUGA   CUGGCG GCU AAUCG    GUGAU CA     A
                    CACU   GAUCGC CGG UUAGC    CACUA GU     A
UUAAUGCACUCCUGCGUCGU^   GU-      C   U     UUGA     U  UCGAU 
      110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ce Em Em Em Em Em Em Em Em Em Em La Ov Se Sp Te Zy
Star sequence

Asu-Mir-2-o8_5p*
mirBase accessionMIMAT0021427
Sequence 
0- UGCUUAAUCGUUCAGUGAUUCA -22
Get sequence
Mature sequence

Asu-Mir-2-o8_3p
mirBase accessionMIMAT0021428
Sequence 
36- UAUCACAGUUCGAUUUGGCCCG -58
Get sequence