MirGeneDB ID | Gpa-Mir-2-P8 |
Family name |
MIR-2 (all species) |
Seed |
ACAGUAU |
Species |
Tsetse fly (Glossina pallidipes) |
MiRBase ID |
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Paralogues |
Gpa-Mir-2-P1-v1
Gpa-Mir-2-P1-v2
Gpa-Mir-2-P2a
Gpa-Mir-2-P2b
Gpa-Mir-2-P3a
Gpa-Mir-2-P3b
Gpa-Mir-2-P4a-v1
Gpa-Mir-2-P4a-v2
Gpa-Mir-2-P4b-v1
Gpa-Mir-2-P4b-v2
Gpa-Mir-2-P5-v1
Gpa-Mir-2-P5-v2
Gpa-Mir-2-P6
Gpa-Mir-2-P7
Gpa-Mir-2-P9
|
Orthologues |
Aae-Mir-2-P8
Aga-Mir-2-P8
Asu-Mir-2-o8
Dan-Mir-2-P8
Dme-Mir-2-P8-v1
Dme-Mir-2-P8-v2
Dmo-Mir-2-P8
Dsi-Mir-2-P8
Dya-Mir-2-P8
Gsp-Mir-2
Hme-Mir-2-P8
Ple-Mir-2
Tca-Mir-2-P8
|
Node of Origin (locus) |
Aparaglossata
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Node of Origin (family) |
Protostomia
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Genome context (GpalI1) |
Scaffold249: 70399-70463 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
GUAAAUGCAUUCUCCCCUCUAUGUUCGACCCACAGUAUAUUUUUGUGUUUUUGUGUAAAUUUAACAAAAGUCAAAUCACAGGAUUAUACUGUGAGUUGUGUAGGGUGAAAAACAUCUUAAUAUCU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUAAAUGCAUUCUCCCC----| GUU C U UU UGUAAAUU
UCUAU CGAC CACAGUAUA UUUUGUG UUUG U
GGAUG GUUG GUGUCAUAU AGGACAC AAAC A
UCUAUAAUUCUACAAAAAGUG^ U-- A U U- UGAAAACA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
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Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Mature sequence |
Gpa-Mir-2-P8_5p |
mirBase accession | None |
Sequence |
0- CACAGUAUAUUUUUGUGUUUUUG -23
Get sequence
|
Star sequence |
Gpa-Mir-2-P8_3p* |
mirBase accession | None |
Sequence |
43- AAUCACAGGAUUAUACUGUGAG -65
Get sequence
|