| MirGeneDB ID | Gpa-Mir-2-P9 |
|---|
| Family name |
MIR-2 (all species) |
|---|
| Seed |
UAAGGAA |
|---|
| Species |
Tsetse fly (Glossina pallidipes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Gpa-Mir-2-P1-v1
Gpa-Mir-2-P1-v2
Gpa-Mir-2-P2a
Gpa-Mir-2-P2b
Gpa-Mir-2-P3a
Gpa-Mir-2-P3b
Gpa-Mir-2-P4a-v1
Gpa-Mir-2-P4a-v2
Gpa-Mir-2-P4b-v1
Gpa-Mir-2-P4b-v2
Gpa-Mir-2-P5-v1
Gpa-Mir-2-P5-v2
Gpa-Mir-2-P6
Gpa-Mir-2-P7
Gpa-Mir-2-P8
|
|---|
| Orthologues |
Asu-Mir-2-o9
Dan-Mir-2-P9
Dme-Mir-2-P9-v1
Dme-Mir-2-P9-v2
Dmo-Mir-2-P9
Dsi-Mir-2-P9-v1
Dsi-Mir-2-P9-v2
Dya-Mir-2-P9-v1
Dya-Mir-2-P9-v2
Gsp-Mir-2
Ple-Mir-2
|
|---|
| Node of Origin (locus) |
Glossinidae + Drosophilidae
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(GpalI1) |
Scaffold132: 422743-422809 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAUAAAAUAAAUAAAAUUAUAUCGAGUUAUCUAAGGAAAUAGUAGCCGUGAUUUUAUUUAACAACUUACACCAUCACAGUUGCUGUUUCUUUUAGAUAACUCGUUCUUUUAAAAACAUCUUUAAAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAUAAAAUAAAUAAAAUUAUAU-- -| C UUUAUUUAA
CGAGUUAUCU AAGGAAAUAGUAGC GUGAU C
GCUCAAUAGA UUUCUUUGUCGUUG CACUA A
AAAAAUUUCUACAAAAAUUUUCUU U^ A CCACAUUCA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Gpa-Mir-2-P9_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CUAAGGAAAUAGUAGCCGUGAU -22
Get sequence
|
|---|
| Star sequence |
Gpa-Mir-2-P9_3p* |
| mirBase accession | None |
|---|
| Sequence |
44- CACAGUUGCUGUUUCUUUUAGAU -67
Get sequence
|
|---|
