Mir-2-P9-v1

MirGeneDB ID

Dme-Mir-2-P9-v1

Family name

MIR-2 (all species)

Seed

UAAGGAA

Species

Fruit fly (Drosophila melanogaster)

MiRBase ID

dme-mir-994

Paralogues

Dme-Mir-2-P1-v1 Dme-Mir-2-P1-v2 Dme-Mir-2-P2a Dme-Mir-2-P2b1 Dme-Mir-2-P2b2 Dme-Mir-2-P3a Dme-Mir-2-P3b Dme-Mir-2-P4a-v1 Dme-Mir-2-P4a-v2 Dme-Mir-2-P4b-v1 Dme-Mir-2-P4b-v2 Dme-Mir-2-P5 Dme-Mir-2-P6a Dme-Mir-2-P6b Dme-Mir-2-P6c Dme-Mir-2-P7 Dme-Mir-2-P8-v1 Dme-Mir-2-P8-v2 Dme-Mir-2-P9-v2

Orthologues

Asu-Mir-2-o9 Dan-Mir-2-P9 Dmo-Mir-2-P9 Dsi-Mir-2-P9-v1 Dsi-Mir-2-P9-v2 Dya-Mir-2-P9-v1 Dya-Mir-2-P9-v2 Gpa-Mir-2-P9 Gsp-Mir-2 Ple-Mir-2

Node of Origin (locus)

Glossinidae + Drosophilidae

Node of Origin (family)

Protostomia

Genome context
(Drosophila_melanogaster_BDGP6)

3R: 10408148-10408216 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P9-v1)

Mir-2-P9-v1 3R: 10408148-10408216 [+] UCSC Ensembl
Mir-2-P9-v2 3R: 10408149-10408215 [+] UCSC Ensembl
Mir-3-P3 3R: 10408308-10408365 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGAUCGCGUCCUGAAUUUAUAUCGAGUUAUCUAAGGAAAUAGUAGCCGUGAUUUUACCCAAGAAUUUUUCACAUAUCACAGUUGCUGUUUCUUUUAGAUAGCUCUUUUGUAAACAGCCUAGAUCCGAAU

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Structure

        10         20         30         40        50        60   
CGAUCGCGUCCUGAAUU-    UC-         -|             C     UUUACCCAAG 
                  UAUA   GAGUUAUCU AAGGAAAUAGUAGC GUGAU          A
                  AUGU   CUCGAUAGA UUUCUUUGUCGUUG CACUA          A
UAAGCCUAGAUCCGACAA    UUU         U^             A     UACACUUUUU 
       120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Bo	He	He	La	Ov	Sa	Wh

Mature sequence

Dme-Mir-2-P9-v1_5p

mirBase accession

MIMAT0005513

Sequence

0- CUAAGGAAAUAGUAGCCGUGAU -22

Get sequence

Proposed targets

microrna.org: MIMAT0005513
TargetScanFly: dme-miR-994

Star sequence

Dme-Mir-2-P9-v1_3p*

mirBase accession

MIMAT0020894

Sequence

46- CACAGUUGCUGUUUCUUUUAGAU -69

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