MirGeneDB 3.0

MirGeneDB ID

Dme-Mir-2-P6b

Family name MIR-2 (all species)
Seed AUCACAG
Species Fruit fly (Drosophila melanogaster)
MiRBase ID dme-mir-6-2
Paralogues Dme-Mir-2-P1-v1  Dme-Mir-2-P1-v2  Dme-Mir-2-P2a  Dme-Mir-2-P2b1  Dme-Mir-2-P2b2  Dme-Mir-2-P3a  Dme-Mir-2-P3b  Dme-Mir-2-P4a-v1  Dme-Mir-2-P4a-v2  Dme-Mir-2-P4b-v1  Dme-Mir-2-P4b-v2  Dme-Mir-2-P5  Dme-Mir-2-P6a  Dme-Mir-2-P6c  Dme-Mir-2-P7  Dme-Mir-2-P8-v1  Dme-Mir-2-P8-v2  Dme-Mir-2-P9-v1  Dme-Mir-2-P9-v2 
Orthologues Asu-Mir-2-o6  Dan-Mir-2-P6b  Dmo-Mir-2-P6b  Dsi-Mir-2-P6b  Dya-Mir-2-P6b  Gpa-Mir-2-P6  Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) Drosophila
Node of Origin (family) Protostomia
Genome context
(Drosophila_melanogaster_BDGP6)
2R: 19660874-19660935 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P6b)
Mir-4983 2R: 19637431-19637502 [+] UCSC Ensembl
Mir-2-P6c 2R: 19660722-19660787 [-] UCSC Ensembl
Mir-2-P6b 2R: 19660874-19660935 [-] UCSC Ensembl
Mir-2-P6a 2R: 19661012-19661074 [-] UCSC Ensembl
Mir-2-P5 2R: 19661162-19661222 [-] UCSC Ensembl
Mir-9-P9 2R: 19661300-19661356 [-] UCSC Ensembl
Mir-279-P1 2R: 19661435-19661509 [-] UCSC Ensembl
Mir-3-P2 2R: 19661600-19661656 [-] UCSC Ensembl
Mir-3-P1 2R: 19661710-19661768 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACACGAAUAACCAUGCCGUUUUUAACCCAAGGGAACUUCUGCUGCUGAUAUAUUAUUGAAAAACUACUAUAUCACAGUGGCUGUUCUUUUUGGUUGCACGGCCAAUUCCAACGAUUUGUCA
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Structure
        10            20        30        40        50        60 
CACACGAAUAACCAUGC----|  UUU     C        UU UG   C       UUAUUGA 
                     CGU   UAACC AAGGGAAC  C  CUG UGAUAUA       \
                     GCA   GUUGG UUUUCUUG  G  GAC ACUAUAU       A
ACUGUUUAGCAACCUUAACCG^  C--     U        UC GU   -       CAUCAAA 
120       110       100          90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo He He La Ov Sa Wh
Star sequence

Dme-Mir-2-P6b_5p*

mirBase accessionMIMAT0020788
Sequence
0- AGGGAACUUCUGCUGCUGAUAUA -23
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Mature sequence

Dme-Mir-2-P6b_3p

mirBase accessionMIMAT0000111
Sequence
40- UAUCACAGUGGCUGUUCUUUUU -62
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Proposed targets microrna.org: MIMAT0000111
TargetScanFly: dme-miR-6