MirGeneDB ID | Gpa-Mir-2-P6 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Tsetse fly (Glossina pallidipes) |
MiRBase ID |
|
Paralogues |
Gpa-Mir-2-P1-v1
Gpa-Mir-2-P1-v2
Gpa-Mir-2-P2a
Gpa-Mir-2-P2b
Gpa-Mir-2-P3a
Gpa-Mir-2-P3b
Gpa-Mir-2-P4a-v1
Gpa-Mir-2-P4a-v2
Gpa-Mir-2-P4b-v1
Gpa-Mir-2-P4b-v2
Gpa-Mir-2-P5-v1
Gpa-Mir-2-P5-v2
Gpa-Mir-2-P7
Gpa-Mir-2-P8
Gpa-Mir-2-P9
|
Orthologues |
Asu-Mir-2-o6
Dan-Mir-2-P6a
Dan-Mir-2-P6b
Dan-Mir-2-P6c
Dme-Mir-2-P6a
Dme-Mir-2-P6b
Dme-Mir-2-P6c
Dmo-Mir-2-P6a
Dmo-Mir-2-P6b
Dmo-Mir-2-P6c
Dsi-Mir-2-P6a
Dsi-Mir-2-P6b
Dsi-Mir-2-P6c
Dya-Mir-2-P6a
Dya-Mir-2-P6b
Dya-Mir-2-P6c
Gsp-Mir-2
Ple-Mir-2
|
Node of Origin (locus) |
Glossinidae + Drosophilidae
|
Node of Origin (family) |
Protostomia
|
Genome context (GpalI1) |
Scaffold26: 93729-93811 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUUUUUCCAAUAAAUUUUGUUUAAAUUGAAGAGAACAGUUAUUGCAGAUAUGUUUUCCAUUUGAGAAAUUCAUCAACAUUUUCAUAUUUAUAUCACAGUGGCUGUUCUUUUUUGAUUUAACAAAUACUCUACAAAGAAAAUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70
UUUUUUUCCAAUAAAUU--| U UG - CA UUUUCCAUUUGAGAAAU
UUGUU AAAU AAGA GAACAGUUAUUG GAUAUG U
AACAA UUUA UUUU CUUGUCGGUGAC CUAUAU C
AUAAAAGAAACAUCUCAUA^ - GU U A- UUAUACUUUUACAACUA
140 130 120 110 100 90 80 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Star sequence |
Gpa-Mir-2-P6_5p* |
mirBase accession | None |
Sequence |
0- AGAGAACAGUUAUUGCAGAUAUG -23
Get sequence
|
Mature sequence |
Gpa-Mir-2-P6_3p |
mirBase accession | None |
Sequence |
61- UAUCACAGUGGCUGUUCUUUUU -83
Get sequence
|