MirGeneDB ID | Gpa-Mir-2-P3b |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Tsetse fly (Glossina pallidipes) |
MiRBase ID |
|
Paralogues |
Gpa-Mir-2-P1-v1
Gpa-Mir-2-P1-v2
Gpa-Mir-2-P2a
Gpa-Mir-2-P2b
Gpa-Mir-2-P3a
Gpa-Mir-2-P4a-v1
Gpa-Mir-2-P4a-v2
Gpa-Mir-2-P4b-v1
Gpa-Mir-2-P4b-v2
Gpa-Mir-2-P5-v1
Gpa-Mir-2-P5-v2
Gpa-Mir-2-P6
Gpa-Mir-2-P7
Gpa-Mir-2-P8
Gpa-Mir-2-P9
|
Orthologues |
Aae-Mir-2-P3
Aga-Mir-2-P3
Bge-Mir-2-P3-v1
Bge-Mir-2-P3-v2
Cbr-Mir-2-o3
Cel-Mir-2-o3
Dan-Mir-2-P3b
Dlo-Mir-2-P3-v1
Dlo-Mir-2-P3-v2
Dma-Mir-2-P3
Dme-Mir-2-P3b
Dmo-Mir-2-P3b
Dpu-Mir-2-P3
Dsi-Mir-2-P3b
Dya-Mir-2-P3b
Gsp-Mir-2
Hme-Mir-2-P3-v1
Hme-Mir-2-P3-v2
Isc-Mir-2-P3
Ple-Mir-2
Tca-Mir-2-P3-v1
Tca-Mir-2-P3-v2
|
Node of Origin (locus) |
Glossinidae + Drosophilidae
|
Node of Origin (family) |
Protostomia
|
Genome context (GpalI1) |
Scaffold18: 2343730-2343802 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUAAAUUUCUUUUAGCAAAGAAUUGUGUCAUUCUUCAAAGUGGCUGCGAAAUGUUGUACACAGCUCGAUUUAAUAUUCAUAUCACAGCCAGCUUUGAGGAGCGUCACAUUUCUUUCACCGAAAAAGUAUUACG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AUAAAUUUCUUUUAGCA-- U UCA -| C A UUGUACACAGC
AAGAA UGUG UUCUUCAAAG UGGCUG GA AUG U
UUCUU ACAC GAGGAGUUUC ACCGAC CU UAC C
GCAUUAUGAAAAAGCCACU U UGC G^ A A UUAUAAUUUAG
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | No |
Tissue expression
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Star sequence |
Gpa-Mir-2-P3b_5p* |
mirBase accession | None |
Sequence |
0- UUCUUCAAAGUGGCUGCGAAAUG -23
Get sequence
|
Mature sequence |
Gpa-Mir-2-P3b_3p |
mirBase accession | None |
Sequence |
49- UAUCACAGCCAGCUUUGAGGAGCG -73
Get sequence
|