Mir-2-P3b

MirGeneDB ID

Dmo-Mir-2-P3b

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Fruit fly (Drosophila mojavensis)

MiRBase ID

dmo-mir-2b

Paralogues

Dmo-Mir-2-P1 Dmo-Mir-2-P2a Dmo-Mir-2-P2b1 Dmo-Mir-2-P2b2 Dmo-Mir-2-P4a-v1 Dmo-Mir-2-P4a-v2 Dmo-Mir-2-P4b-v1 Dmo-Mir-2-P4b-v2 Dmo-Mir-2-P5 Dmo-Mir-2-P6a Dmo-Mir-2-P6b Dmo-Mir-2-P6c Dmo-Mir-2-P7 Dmo-Mir-2-P8 Dmo-Mir-2-P9

Orthologues

Aae-Mir-2-P3 Bge-Mir-2-P3 Cbr-Mir-2-o3 Cel-Mir-2-o3 Dan-Mir-2-P3b Dma-Mir-2-P3 Dme-Mir-2-P3b Dpu-Mir-2-P3 Dsi-Mir-2-P3b Dya-Mir-2-P3b Hme-Mir-2-P3-v1 Hme-Mir-2-P3-v2 Isc-Mir-2-P3 Tca-Mir-2-P3-v1 Tca-Mir-2-P3-v2

Node of Origin (locus)

Drosophila

Node of Origin (family)

Protostomia

Genome context
(Dmoj_caf1)

scaffold_6500: 6907827-6907894 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P3b)

Mir-2-P3b scaffold_6500: 6907827-6907894 [+] Ensembl
Mir-2-P4a-v1 scaffold_6500: 6908329-6908396 [+] Ensembl
Mir-2-P4a-v2 scaffold_6500: 6908329-6908396 [+] Ensembl
Mir-2-P4b-v2 scaffold_6500: 6908917-6908978 [+] Ensembl
Mir-2-P4b-v1 scaffold_6500: 6908918-6908977 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AGUGAGAGACCAAGAGAGAGAAUUGUGUCAUUCUUCAAAGUGGUUGUGAAAUGUUUGCUUUUUCUGCCUACUCAUAUCACAGCCAGCUUUGAGGAGCGACACGAUGCUCAGUACAAAAUUCAAAACAU

Get precursor sequence

Structure

        10          20        30        40         50        60   
AGUGAGAGACCAAGAGA--   A        A          -|        A   UUUGCUUUU 
                   GAG AUUGUGUC UUCUUCAAAG UGGUUGUGA AUG         \
                   CUC UAGCACAG GAGGAGUUUC ACCGACACU UAC         U
UACAAAACUUAAAACAUGA   G        C          G^        A   UCAUCCGUC 
      120       110       100        90        80        70

Deep sequencing

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3' NTU

Yes

Motifs

Tissue expression

Em	Fe	Ma	Ma

Star sequence

Dmo-Mir-2-P3b_5p*

mirBase accession

None

Sequence

0- UUCUUCAAAGUGGUUGUGAAAUG -23

Get sequence

Mature sequence

Dmo-Mir-2-P3b_3p

mirBase accession

MIMAT0008650

Sequence

44- UAUCACAGCCAGCUUUGAGGAGCG -68

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