Mir-2-P3

MirGeneDB ID

Isc-Mir-2-P3

Family name

MIR-2 (all species)

Seed

CAUCAAA

Species

Deer tick (Ixodes scapularis)

MiRBase ID

Paralogues

Isc-Mir-2-P1 Isc-Mir-2-P4

Orthologues

Aae-Mir-2-P3 Aga-Mir-2-P3 Bge-Mir-2-P3-v1 Bge-Mir-2-P3-v2 Cbr-Mir-2-o3 Cel-Mir-2-o3 Csc-Mir-2-P3n Csc-Mir-2-P3o Dan-Mir-2-P3a-v1 Dan-Mir-2-P3a-v2 Dan-Mir-2-P3b Dlo-Mir-2-P3-v1 Dlo-Mir-2-P3-v2 Dma-Mir-2-P3 Dme-Mir-2-P3a Dme-Mir-2-P3b Dmo-Mir-2-P3b Dpu-Mir-2-P3 Dsi-Mir-2-P3a Dsi-Mir-2-P3b Dya-Mir-2-P3a Dya-Mir-2-P3b Gpa-Mir-2-P3a Gpa-Mir-2-P3b Gsp-Mir-2 Hme-Mir-2-P3-v1 Hme-Mir-2-P3-v2 Lpo-Mir-2-P3g Lpo-Mir-2-P3h Lpo-Mir-2-P3i Lpo-Mir-2-P3k Lpo-Mir-2-P3l Lpo-Mir-2-P3m Ple-Mir-2 Tca-Mir-2-P3-v1 Tca-Mir-2-P3-v2

Node of Origin (locus)

Arthropoda

Node of Origin (family)

Protostomia

Genome context
(GCF_016920785.2_ASM1692078v2_ISC)

NW_024609884.1: 3130575-3130635 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P3)

Mir-71 NW_024609884.1: 3130205-3130267 [+] Ensembl
Mir-2-P1 NW_024609884.1: 3130345-3130409 [+] Ensembl
Mir-2-P4 NW_024609884.1: 3130738-3130797 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CCCCCCUCGUUCGAGAUUGCUCUCACCCGGGCAUCAAACUGGUUGUGGUUUGUCAUGUCAGAUAUCAUAUCACAGCCAUCUUUGAUGACCCUGGCCCGGCAAAUUGGCAUCGUGGUUGUGG

Get precursor sequence

Structure

        10           20        30          40        50         
CCCCCCUCGUUCGAGAU---    CUCA  C   -       C-|         U  UCAUGU 
                    UGCU    CC GGG CAUCAAA  UGGUUGUGGU UG      \
                    ACGG    GG CCC GUAGUUU  ACCGACACUA AC      C
GGUGUUGGUGCUACGGUUAA    CCC-  U   A       CU^         U  UAUAGA 
 .       110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Sa	Sa	To

Mature sequence

Isc-Mir-2-P3_5p

mirBase accession

None

Sequence

0- GCAUCAAACUGGUUGUGGUUUG -22

Get sequence

Star sequence

Isc-Mir-2-P3_3p*

mirBase accession

None

Sequence

37- UAUCACAGCCAUCUUUGAUGACCC -61

Get sequence