MirGeneDB 2.1

MirGeneDB ID

Isc-Mir-2-P1

Family name MIR-2 (all species)
Seed AUCACAG
Species Deer tick (Ixodes scapularis)
MiRBase ID isc-mir-2b
Paralogues Isc-Mir-2-P3  Isc-Mir-2-P4 
Orthologues Aae-Mir-2-P1-v1  Aae-Mir-2-P1-v2  Bge-Mir-2-P1-v1  Bge-Mir-2-P1-v2  Csc-Mir-2-P1n  Csc-Mir-2-P1o  Dan-Mir-2-P1-v1  Dan-Mir-2-P1-v2  Dma-Mir-2-o1  Dma-Mir-2-P1  Dme-Mir-2-P1-v1  Dme-Mir-2-P1-v2  Dmo-Mir-2-P1  Dpu-Mir-2-o1  Dpu-Mir-2-P1  Dsi-Mir-2-P1-v1  Dsi-Mir-2-P1-v2  Dya-Mir-2-P1-v1  Dya-Mir-2-P1-v2  Hme-Mir-2-P1-v1  Hme-Mir-2-P1-v2  Lpo-Mir-2-P1g  Lpo-Mir-2-P1h  Lpo-Mir-2-P1i  Lpo-Mir-2-P1j  Lpo-Mir-2-P1k  Lpo-Mir-2-P1l  Lpo-Mir-2-P1m  Tca-Mir-2-P1-v1  Tca-Mir-2-P1-v2 
Node of Origin (locus) Arthropoda
Node of Origin (family) Protostomia
Genome context
(IscaWI)
DS799611: 45564-45628 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P1)
Mir-2-P4 DS799611: 45175-45234 [-] Ensembl
Mir-2-P1 DS799611: 45564-45628 [-] Ensembl
Mir-71 DS799611: 45706-45768 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CAACGGCCAGGCUAAUGUUUUCCUGUGCAGCCGUCAAAGGGACUGUGAAAUGUCUCCCUUCUUGGUCAGCAUAUCACAGCCACCUUUGAUGAGCUGUACACGAAUCGGACUCCUUCGAGGUGCAG
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Structure
        10          20        30         40         50        60 
CAACGGCCAGGCUAAUGUU--   C        -         GA-|     A   UCUCCCUU 
                     UUC UGUGCAGC CGUCAAAGG   CUGUGA AUG        \
                     AAG ACAUGUCG GUAGUUUCC   GACACU UAC        C
GACGUGGAGCUUCCUCAGGCU   C        A         ACC^     A   GACUGGUU 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Al Mi Mi Mi Sa Sa Sa Sa To
Star sequence

Isc-Mir-2-P1_5p*

mirBase accessionNone
Sequence
0- CCGUCAAAGGGACUGUGAAAUG -22
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Mature sequence

Isc-Mir-2-P1_3p

mirBase accessionMIMAT0012697
Sequence
41- UAUCACAGCCACCUUUGAUGAGCU -65
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