Mir-2-P1k

MirGeneDB ID

Lpo-Mir-2-P1k

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-2-P1g Lpo-Mir-2-P1h Lpo-Mir-2-P1i Lpo-Mir-2-P1j Lpo-Mir-2-P1l Lpo-Mir-2-P1m Lpo-Mir-2-P2g Lpo-Mir-2-P2h Lpo-Mir-2-P2j Lpo-Mir-2-P2l Lpo-Mir-2-P2m Lpo-Mir-2-P3g Lpo-Mir-2-P3h Lpo-Mir-2-P3i Lpo-Mir-2-P3k Lpo-Mir-2-P3l Lpo-Mir-2-P3m Lpo-Mir-2-P4h Lpo-Mir-2-P4i Lpo-Mir-2-P4j Lpo-Mir-2-P4k Lpo-Mir-2-P4l

Orthologues

Aae-Mir-2-P1-v1 Aae-Mir-2-P1-v2 Aga-Mir-2-P1-v1 Aga-Mir-2-P1-v2 Bge-Mir-2-P1-v1 Bge-Mir-2-P1-v2 Dan-Mir-2-P1-v1 Dan-Mir-2-P1-v2 Dlo-Mir-2-P1-v1 Dlo-Mir-2-P1-v2 Dma-Mir-2-P1 Dme-Mir-2-P1-v1 Dme-Mir-2-P1-v2 Dmo-Mir-2-P1 Dpu-Mir-2-P1 Dsi-Mir-2-P1-v1 Dsi-Mir-2-P1-v2 Dya-Mir-2-P1-v1 Dya-Mir-2-P1-v2 Gpa-Mir-2-P1-v1 Gpa-Mir-2-P1-v2 Gsp-Mir-2 Hme-Mir-2-P1-v1 Hme-Mir-2-P1-v2 Isc-Mir-2-P1 Ple-Mir-2 Tca-Mir-2-P1-v1 Tca-Mir-2-P1-v2

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Protostomia

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013666817.1: 137210-137272 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

AUUUUCAAAGGUUAAUUACCUGUUAUGCAGUCUUCAAAGGGGUUGUGAAAUGUGUGCUUAUUCAGUUUCAUAUCACAGCCAUCUUUGAUGAGCUGUACAGCAGUUCCAGACUGAAGAUUUCAU

Get precursor sequence

Structure

        10         20        30         40         50        60
AUUUUCAAAGGUUAAUUAC-     A     -  U       -|       A   UGUGCUU 
                    CUGUU UGCAG UC UCAAAGG GGUUGUGA AUG       A
                    GACGA AUGUC AG AGUUUCU CCGACACU UAC       U
UACUUUAGAAGUCAGACCUU     C     G  U       A^       A   UUUGACU 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-2-P1k_5p*

mirBase accession

None

Sequence

0- UCUUCAAAGGGGUUGUGAAAUG -22

Get sequence

Mature sequence

Lpo-Mir-2-P1k_3p

mirBase accession

None

Sequence

40- UAUCACAGCCAUCUUUGAUGAGC -63

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