MirGeneDB ID | Lpo-Mir-2-P3k |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Mir-2-P1g
Lpo-Mir-2-P1h
Lpo-Mir-2-P1i
Lpo-Mir-2-P1j
Lpo-Mir-2-P1k
Lpo-Mir-2-P1l
Lpo-Mir-2-P1m
Lpo-Mir-2-P2g
Lpo-Mir-2-P2h
Lpo-Mir-2-P2j
Lpo-Mir-2-P2l
Lpo-Mir-2-P2m
Lpo-Mir-2-P3g
Lpo-Mir-2-P3h
Lpo-Mir-2-P3i
Lpo-Mir-2-P3l
Lpo-Mir-2-P3m
Lpo-Mir-2-P4h
Lpo-Mir-2-P4i
Lpo-Mir-2-P4j
Lpo-Mir-2-P4k
Lpo-Mir-2-P4l
|
Orthologues |
Aae-Mir-2-P3
Aga-Mir-2-P3
Bge-Mir-2-P3-v1
Bge-Mir-2-P3-v2
Cbr-Mir-2-o3
Cel-Mir-2-o3
Dlo-Mir-2-P3-v1
Dlo-Mir-2-P3-v2
Dma-Mir-2-P3
Dpu-Mir-2-P3
Gsp-Mir-2
Hme-Mir-2-P3-v1
Hme-Mir-2-P3-v2
Isc-Mir-2-P3
Ple-Mir-2
Tca-Mir-2-P3-v1
Tca-Mir-2-P3-v2
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Protostomia
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013666817.1: 133824-133885 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGCAAGAAAUGUAAAGUCAGUUCCCCAUCACUCACAAAGUGGCUGUUAUAUGCUGCUAAUAGGGUUCAUAUCACAGCCAGCUUUGAUGAGCGAAGAGGAUGCUGUUGGCGUCGAAACCACAC
Get precursor sequence
|
Structure | 10 20 30 40 50
CGCAAGAAAUGUAAAGU- - CCA A - -| U CUGCUA
CAGU UCC UC CUCA CAAAG UGGCUGU AUAUG A
GUCG AGG AG GAGU GUUUC ACCGACA UAUAC U
CACACCAAAGCUGCGGUU U AGA C A G^ C UUGGGA
120 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Lpo-Mir-2-P3k_5p* |
mirBase accession | None |
Sequence |
0- CUCACAAAGUGGCUGUUAUAUG -22
Get sequence
|
Mature sequence |
Lpo-Mir-2-P3k_3p |
mirBase accession | None |
Sequence |
38- UAUCACAGCCAGCUUUGAUGAGCG -62
Get sequence
|