Mir-2-P2m

MirGeneDB ID

Lpo-Mir-2-P2m

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-2-P1g Lpo-Mir-2-P1h Lpo-Mir-2-P1i Lpo-Mir-2-P1j Lpo-Mir-2-P1k Lpo-Mir-2-P1l Lpo-Mir-2-P1m Lpo-Mir-2-P2g Lpo-Mir-2-P2h Lpo-Mir-2-P2j Lpo-Mir-2-P2l Lpo-Mir-2-P3g Lpo-Mir-2-P3h Lpo-Mir-2-P3i Lpo-Mir-2-P3k Lpo-Mir-2-P3l Lpo-Mir-2-P3m Lpo-Mir-2-P4h Lpo-Mir-2-P4i Lpo-Mir-2-P4j Lpo-Mir-2-P4k Lpo-Mir-2-P4l

Orthologues

Dma-Mir-2-o2 Dma-Mir-2-P2 Dpu-Mir-2-o2 Dpu-Mir-2-P2 Gsp-Mir-2 Ple-Mir-2

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Protostomia

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013668542.1: 83483-83542 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UACAUCAGAAAAAGCCCGUGUCUCACUUGGCCGCCAAUAUGGCAGUGAUAUGUUGUGAAGUUUGUCAUAUCACAGCCAUCUUGACGUGUCUUGAGAGGAUAAUCUUGCAUCACAGAGGAA

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Structure

        10        20            30         40        50         
UACAUCAGAAAAAGCCCGUG----|    CUU   -  C   U     A        UUGUGA 
                        UCUCA   GGC CG CAA AUGGC GUGAUAUG      \
                        AGAGU   CUG GC GUU UACCG CACUAUAC      A
AAGGAGACACUACGUUCUAAUAGG^    U--   U  A   C     A        UGUUUG 
.       110       100          90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-2-P2m_5p*

mirBase accession

None

Sequence

0- CCGCCAAUAUGGCAGUGAUAUG -22

Get sequence

Mature sequence

Lpo-Mir-2-P2m_3p

mirBase accession

None

Sequence

37- UAUCACAGCCAUCUUGACGUGUC -60

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