MirGeneDB 2.1

MirGeneDB ID

Lpo-Mir-2-P1m

Family name MIR-2 (all species)
Seed AUCACAG
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-2-P1g  Lpo-Mir-2-P1h  Lpo-Mir-2-P1i  Lpo-Mir-2-P1j  Lpo-Mir-2-P1k  Lpo-Mir-2-P1l  Lpo-Mir-2-P2g  Lpo-Mir-2-P2h  Lpo-Mir-2-P2j  Lpo-Mir-2-P2l  Lpo-Mir-2-P2m  Lpo-Mir-2-P3g  Lpo-Mir-2-P3h  Lpo-Mir-2-P3i  Lpo-Mir-2-P3k  Lpo-Mir-2-P3l  Lpo-Mir-2-P3m  Lpo-Mir-2-P4h  Lpo-Mir-2-P4i  Lpo-Mir-2-P4j  Lpo-Mir-2-P4k  Lpo-Mir-2-P4l 
Orthologues Aae-Mir-2-P1-v1  Aae-Mir-2-P1-v2  Bge-Mir-2-P1-v1  Bge-Mir-2-P1-v2  Dan-Mir-2-P1-v1  Dan-Mir-2-P1-v2  Dma-Mir-2-o1  Dma-Mir-2-P1  Dme-Mir-2-P1-v1  Dme-Mir-2-P1-v2  Dmo-Mir-2-P1  Dpu-Mir-2-o1  Dpu-Mir-2-P1  Dsi-Mir-2-P1-v1  Dsi-Mir-2-P1-v2  Dya-Mir-2-P1-v1  Dya-Mir-2-P1-v2  Hme-Mir-2-P1-v1  Hme-Mir-2-P1-v2  Isc-Mir-2-P1  Tca-Mir-2-P1-v1  Tca-Mir-2-P1-v2 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013668542.1: 81176-81238 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAUUGUGAUUGCGAGUAUCCUGUUCUGCAGCCAUCAAAGAAGCUGUGAAAUGUGUUCUGGUUUUUAUCAUAUCACAGCCAUCUUUGAUGAGCUGUAUGACAGCCAGGCACUAGAAAAUCCCAU
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Structure
        10          20        30         40         50          
AAUUGUGAUUGCGAGUAUC--     C      -         A-|      A   UGUUCUG 
                     CUGUU UGCAGC CAUCAAAGA  GCUGUGA AUG       \
                     GACAG AUGUCG GUAGUUUCU  CGACACU UAC       G
UACCCUAAAAGAUCACGGACC     U      A         AC^      A   UAUUUUU 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Fe Fe Fe Ma Ma To
Star sequence

Lpo-Mir-2-P1m_5p*

mirBase accessionNone
Sequence
0- CCAUCAAAGAAGCUGUGAAAUG -22
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Mature sequence

Lpo-Mir-2-P1m_3p

mirBase accessionNone
Sequence
39- UAUCACAGCCAUCUUUGAUGAGCU -63
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