MirGeneDB 2.1

MirGeneDB ID

Dpu-Mir-2-P1

Family name MIR-2 (all species)
Seed AUCACAG
Species Common water flea (Daphnia pulex)
MiRBase ID
Paralogues Dpu-Mir-2-o1  Dpu-Mir-2-o2  Dpu-Mir-2-P2  Dpu-Mir-2-P3  Dpu-Mir-2-P4 
Orthologues Aae-Mir-2-P1-v1  Aae-Mir-2-P1-v2  Bge-Mir-2-P1-v1  Bge-Mir-2-P1-v2  Csc-Mir-2-P1n  Csc-Mir-2-P1o  Dan-Mir-2-P1-v1  Dan-Mir-2-P1-v2  Dma-Mir-2-o1  Dma-Mir-2-P1  Dme-Mir-2-P1-v1  Dme-Mir-2-P1-v2  Dmo-Mir-2-P1  Dsi-Mir-2-P1-v1  Dsi-Mir-2-P1-v2  Dya-Mir-2-P1-v1  Dya-Mir-2-P1-v2  Hme-Mir-2-P1-v1  Hme-Mir-2-P1-v2  Isc-Mir-2-P1  Lpo-Mir-2-P1g  Lpo-Mir-2-P1h  Lpo-Mir-2-P1i  Lpo-Mir-2-P1j  Lpo-Mir-2-P1k  Lpo-Mir-2-P1l  Lpo-Mir-2-P1m  Tca-Mir-2-P1-v1  Tca-Mir-2-P1-v2 
Node of Origin (locus) Arthropoda
Node of Origin (family) Protostomia
Genome context
(Daphnia_pulex.V1.0)
DAPPUscaffold_80: 240557-240644 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P1)
Mir-71 DAPPUscaffold_80: 240430-240495 [+] Ensembl
Mir-2-P3 DAPPUscaffold_80: 240864-240934 [+] Ensembl
Mir-2-P4 DAPPUscaffold_80: 241044-241106 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GCUCAUUUUCAAUCGCCGACCGAUUUCGGGCCGUCAGAGUCGACUGCGAAAUGCUAUCGAUGCGAUGAAGUUUCCGCGCGAAAUUUCAAAAGUCAUAUCACAGCCAGCUUUGACGAGCCGGAUAUCGAGUCUCAUUCAUCUUUCGUCC
Get precursor sequence
Structure
        10        20         30         40        50        60        70   
GCUCAUUUUCAAUCGCCG  -    U  G   -|        CGA   C  A   CUAUCGAUGCGAUGAAGUU 
                  AC CGAU UC GGC CGUCAGAGU   CUG GA AUG                   U
                  UG GCUA AG CCG GCAGUUUCG   GAC CU UAC                   C
CCUGCUUUCUACUUACUC  A    U  G   A^        ACC   A  A   UGAAAACUUUAAAGCGCGC 
      140       130       120       110       100        90        80
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
To
Star sequence

Dpu-Mir-2-P1_5p* (predicted)

mirBase accessionNone
Sequence
0- CCGUCAGAGUCGACUGCGAAAUG -23
Get sequence
Mature sequence

Dpu-Mir-2-P1_3p

mirBase accessionNone
Sequence
65- UAUCACAGCCAGCUUUGACGAGC -88
Get sequence