MirGeneDB 3.0
MirGeneDB ID

Dpu-Mir-2-P5

Family name MIR-2 (all species)
Seed AUCACAG
Species Common water flea (Daphnia pulex)
MiRBase ID
Paralogues Dpu-Mir-2-o2  Dpu-Mir-2-P1  Dpu-Mir-2-P2  Dpu-Mir-2-P3  Dpu-Mir-2-P4 
Orthologues Aae-Mir-2-P5a  Aae-Mir-2-P5b  Aga-Mir-2-P5a1  Aga-Mir-2-P5a2  Aga-Mir-2-P5b  Cel-Mir-2-o5  Dan-Mir-2-P5  Dlo-Mir-2-P5  Dma-Mir-2-P5  Dme-Mir-2-P5  Dmo-Mir-2-P5  Dsi-Mir-2-P5  Dya-Mir-2-P5  Gpa-Mir-2-P5-v1  Gpa-Mir-2-P5-v2  Gsp-Mir-2  Ple-Mir-2  Tca-Mir-2-P5c  Tca-Mir-2-P5d  Tca-Mir-2-P5e 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Protostomia
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_32: 69416-69503 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P5)		 Mir-965 DAPPUscaffold_32: 27782-27843 [-] Ensembl
Mir-279-P1d DAPPUscaffold_32: 68663-68726 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUUACCUCUCCAGUGUAGAGUAACGGGACCUAGGAACUACCGCUUGUGGUUGAUUGAAUUGUCGAUUUUUCCGAAUCGAUUCAAUUGUCUUAUUUCUAUCACAGUCGUAGUUACUAGAUAACGAUACUCGUUCGUCUCGUUAACGUGC
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Structure
        10          20        30        40        50        60        70    
CUUACCUCUCCAGUGUA--|    A  GGAC    G      C   U     U  UUGAAUUGUCGAUUUUUCCG 
                   GAGUA CG    CUAG AACUAC GCU GUGGU GA                    \
                   CUCAU GC    GAUC UUGAUG UGA CACUA CU                    A
CGUGCAAUUGCUCUGCUUG^    A  AAUA    A      C   -     U  UUAUUCUGUUAACUUAGCUA 
      140       130       120       110        100        90        80
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
To
Star sequence

Dpu-Mir-2-P5_5p*
mirBase accessionNone
Sequence 
0- UAGGAACUACCGCUUGUGGUUGA -23
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Mature sequence

Dpu-Mir-2-P5_3p
mirBase accessionNone
Sequence 
66- UAUCACAGUCGUAGUUACUAGA -88
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