Mir-2-P5a1

MirGeneDB ID

Aga-Mir-2-P5a1

Family name

MIR-2 (all species)

Seed

AAGGAAC

Species

African malaria mosquito (Anopheles gambiae)

MiRBase ID

aga-mir-2944a-1

Paralogues

Aga-Mir-2-P1-v1 Aga-Mir-2-P1-v2 Aga-Mir-2-P2a Aga-Mir-2-P2b Aga-Mir-2-P3 Aga-Mir-2-P4-v1 Aga-Mir-2-P4-v2 Aga-Mir-2-P5a2 Aga-Mir-2-P5b Aga-Mir-2-P7 Aga-Mir-2-P8

Orthologues

Aae-Mir-2-P5a Cel-Mir-2-o5 Dan-Mir-2-P5 Dlo-Mir-2-P5 Dma-Mir-2-P5 Dme-Mir-2-P5 Dmo-Mir-2-P5 Dpu-Mir-2-P5 Dsi-Mir-2-P5 Dya-Mir-2-P5 Gpa-Mir-2-P5-v1 Gpa-Mir-2-P5-v2 Gsp-Mir-2 Ple-Mir-2

Node of Origin (locus)

A. gambiae

Node of Origin (family)

Protostomia

Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)

NC_064602.1: 42670118-42670173 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P5a1)

Mir-2-P5a1 NC_064602.1: 42670118-42670173 [-] Ensembl
Mir-2-P5b NC_064602.1: 42670305-42670366 [-] Ensembl
Mir-279-P1a NC_064602.1: 42670645-42670715 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UCAUAUUUACAAGCCCUGGGCGUCUACAUUGAAGGAACUUCUGCUGUGAUCUGAGUUAGGAUCAUAUCACAGUAGUUGUACUUUAAUGUCGGCACUUCCCACAAUCAUCGACGAUG

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Structure

        10          20        30        40        50        
UCAUAUUUACAAGCCCU--|  C   U         GA  UU          CUGAGUU 
                   GGG GUC ACAUUGAAG  AC  CUGCUGUGAU       \
                   UUC CGG UGUAAUUUC  UG  GAUGACACUA       A
GUAGCAGCUACUAACACCC^  A   C         A-  UU          UACUAGG 
    110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Ab	Ab	He	He	Mi	Mi	Ov	Ov	Ov

Mature sequence

Aga-Mir-2-P5a1_5p

mirBase accession

MIMAT0041503

Sequence

0- GAAGGAACUUCUGCUGUGAUCU -22

Get sequence

Star sequence

Aga-Mir-2-P5a1_3p* (predicted)

mirBase accession

MIMAT0041504

Sequence

36- UCACAGUAGUUGUACUUUAA -56

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