Mir-2-P5a

MirGeneDB ID

Aae-Mir-2-P5a

Family name

MIR-2 (all species)

Seed

AAGGAAC

Species

Yellow fever mosquito (Aedes aegypti)

MiRBase ID

aae-mir-2944b

Paralogues

Aae-Mir-2-P1-v1 Aae-Mir-2-P1-v2 Aae-Mir-2-P2b Aae-Mir-2-P3 Aae-Mir-2-P4-v1 Aae-Mir-2-P4-v2 Aae-Mir-2-P5b Aae-Mir-2-P7 Aae-Mir-2-P8

Orthologues

Aga-Mir-2-P5a1 Aga-Mir-2-P5a2 Cel-Mir-2-o5 Dan-Mir-2-P5 Dlo-Mir-2-P5 Dma-Mir-2-P5 Dme-Mir-2-P5 Dmo-Mir-2-P5 Dpu-Mir-2-P5 Dsi-Mir-2-P5 Dya-Mir-2-P5 Gpa-Mir-2-P5-v1 Gpa-Mir-2-P5-v2 Gsp-Mir-2 Ple-Mir-2

Node of Origin (locus)

Culicidae

Node of Origin (family)

Protostomia

Genome context
(Aaeg_L3)

supercont1.602: 93656-93722 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P5a)

Mir-2-P5a supercont1.602: 93656-93722 [+] Ensembl
Mir-3-o1a supercont1.602: 94041-94109 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CUAACGGUGUCCCGAGAGUGAUCGAAGUUCGAAGGAACUCCCGGUGUGAUAUUCGAAGUUACAAUUGGAUAGCAUAUCACAGCAGUAGUUACCUACCAACUUUGCACUUUGCCAGUCUUCGUCGUCG

Get precursor sequence

Structure

        10           20        30         40         50        60   
CUAACGGUGUCCCGAGA---|  AU       CGA   -    CCCG -        UCGAAGUUAC 
                    GUG  CGAAGUU   AGG AACU    G UGUGAUAU          \
                    CAC  GUUUCAA   UCC UUGA    C ACACUAUA          A
GCUGCUGCUUCUGACCGUUU^  --       CCA   A    UGA- G        CGAUAGGUUA 
     120       110         100        90         80        70