MirGeneDB 3.0
MirGeneDB ID

Aae-Mir-3-o1a

Family name MIR-3 (all species)
Seed CACUGGG
Species Yellow fever mosquito (Aedes aegypti)
MiRBase ID aae-mir-309a-1
Paralogues Aae-Mir-3-o1b  Aae-Mir-3-o2 
Orthologues Aga-Mir-3-o1  Dan-Mir-3-P1  Dlo-Mir-3  Dma-Mir-3  Dme-Mir-3-P1  Dmo-Mir-3-P1  Dpu-Mir-3  Dsi-Mir-3-P1  Dya-Mir-3-P1  Gpa-Mir-3 
Node of Origin (locus) A. aegypti
Node of Origin (family) Pancrustacea
Genome context
(Aaeg_L3)		 supercont1.602: 94041-94109 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-3-o1a)		 Mir-2-P5a supercont1.602: 93656-93722 [+] Ensembl
Mir-3-o1a supercont1.602: 94041-94109 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUGAUUCCAAAAUAUCCACCGAAUGUUAUGCGACUAACUUCGUUCAGUUUGGUGUCAUACGAAGGUUUCCAGUUUCAUCACUGGGCAAAGUUUGUCGCAUAAAUGCAAAUAAUUCAUCCGUUGCAGUUG
Get precursor sequence
Structure
        10        20          30        40         50        60   
GUGAUUCCAAAAUAUCCACCGAAUG--         U     C       U-|  UGUCAUACGA 
                           UUAUGCGAC AACUU GUUCAGU  UGG          A
                           AAUACGCUG UUGAA CGGGUCA  ACU          G
GUUGACGUUGCCUACUUAAUAAACGUA         U     A       CU^  UUGACCUUUG 
       120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ge Ge So So To To To
Star sequence

Aae-Mir-3-o1a_5p*
mirBase accessionNone
Sequence 
0- CGACUAACUUCGUUCAGUUUGGU -23
Get sequence
Mature sequence

Aae-Mir-3-o1a_3p
mirBase accessionMIMAT0014272
Sequence 
47- UCACUGGGCAAAGUUUGUCGCA -69
Get sequence