Mir-3-P1

MirGeneDB ID

Dan-Mir-3-P1

Family name

MIR-3 (all species)

Seed

CACUGGG

Species

Fruit fly (Drosophila ananassae)

MiRBase ID

dan-mir-309

Paralogues

Dan-Mir-3-P2 Dan-Mir-3-P3

Orthologues

Aae-Mir-3-o1a Aae-Mir-3-o1b Aga-Mir-3-o1 Dlo-Mir-3 Dma-Mir-3 Dme-Mir-3-P1 Dmo-Mir-3-P1 Dpu-Mir-3 Dsi-Mir-3-P1 Dya-Mir-3-P1 Gpa-Mir-3

Node of Origin (locus)

Drosophila

Node of Origin (family)

Pancrustacea

Genome context
(Dana_caf1)

scaffold_13266: 9731119-9731176 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-3-P1)

Mir-3-P1 scaffold_13266: 9731119-9731176 [+] Ensembl
Mir-3-P2 scaffold_13266: 9731233-9731293 [+] Ensembl
Mir-279-P1 scaffold_13266: 9731371-9731449 [+] Ensembl
Mir-9-P9 scaffold_13266: 9731536-9731592 [+] Ensembl
Mir-2-P5 scaffold_13266: 9731684-9731747 [+] Ensembl
Mir-2-P6a scaffold_13266: 9731826-9731883 [+] Ensembl
Mir-2-P6b scaffold_13266: 9731970-9732041 [+] Ensembl
Mir-2-P6c scaffold_13266: 9732130-9732191 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GCCGCGAGUUACAAAGUGAAGAUCAUUAUACGACAAACCUUGUUCGGUUUUGCCAAUUUCCUAGCAGCACUGGGUAAAGUUUGUCCUAUAAUCUAUAAAAAAGCCGUCCAGACAUCUG

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Structure

        10             20        30        40        50        
GCCGCGAGUUACAAAGUGA-----|   CAU    C       C   UU    U   CCAAU 
                        AGAU   UAUA GACAAAC UUG  CGGU UUG     U
                        UCUA   AUAU CUGUUUG AAU  GUCA GAC     U
GUCUACAGACCUGCCGAAAAAAUA^   ---    C       A   GG    C   GAUCC 
      110       100           90        80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Fe

Star sequence

Dan-Mir-3-P1_5p*

mirBase accession

None

Sequence

0- CGACAAACCUUGUUCGGUUUUG -22

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Mature sequence

Dan-Mir-3-P1_3p

mirBase accession

MIMAT0008453

Sequence

36- GCACUGGGUAAAGUUUGUCCUA -58

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