MirGeneDB 3.0
MirGeneDB ID

Dmo-Mir-3-P1

Family name MIR-3 (all species)
Seed CACUGGG
Species Fruit fly (Drosophila mojavensis)
MiRBase ID dmo-mir-309
Paralogues Dmo-Mir-3-P2  Dmo-Mir-3-P3 
Orthologues Aae-Mir-3-o1a  Aae-Mir-3-o1b  Aga-Mir-3-o1  Dan-Mir-3-P1  Dlo-Mir-3  Dma-Mir-3  Dme-Mir-3-P1  Dpu-Mir-3  Dsi-Mir-3-P1  Dya-Mir-3-P1  Gpa-Mir-3 
Node of Origin (locus) Drosophila
Node of Origin (family) Pancrustacea
Genome context
(Dmoj_caf1)		 scaffold_6496: 20937123-20937187 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-3-P1)		 Mir-2-P6c scaffold_6496: 20935964-20936029 [-] Ensembl
Mir-2-P6b scaffold_6496: 20936142-20936210 [-] Ensembl
Mir-2-P6a scaffold_6496: 20936318-20936375 [-] Ensembl
Mir-2-P5 scaffold_6496: 20936468-20936531 [-] Ensembl
Mir-9-P9 scaffold_6496: 20936638-20936694 [-] Ensembl
Mir-279-P1 scaffold_6496: 20936799-20936877 [-] Ensembl
Mir-3-P2 scaffold_6496: 20936995-20937055 [-] Ensembl
Mir-3-P1 scaffold_6496: 20937123-20937187 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UAUAUAUAUAUACAAGAACAGAAUAUUAUAAGGUAAACUUUGUUCAGUUUUGCCGGGUUCUAUGUUGUGCGCAUCACUGGGUGAAGUUUGUCGUAUAAUCGAAACGAAACAGCAAGGAAAAAGUC
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Structure
        10        20          30        40        50        60  
UAUAUAUAUAUACAAGAACAGAAU--|     A GU      UG      UU  CCGGGUUCU 
                          AUUAUA G  AAACUU  UUCAGU  UG         \
                          UAAUAU C  UUUGAA  GGGUCA  AC         A
CUGAAAAAGGAACGACAAAGCAAAGC^     G UG      GU      CU  GCGUGUUGU 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Em Fe Ma Ma
Star sequence

Dmo-Mir-3-P1_5p*
mirBase accessionNone
Sequence 
0- AGGUAAACUUUGUUCAGUUUUG -22
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Mature sequence

Dmo-Mir-3-P1_3p
mirBase accessionMIMAT0008660
Sequence 
43- UCACUGGGUGAAGUUUGUCGUA -65
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