Mir-3-P1

MirGeneDB ID

Dya-Mir-3-P1

Family name

MIR-3 (all species)

Seed

CACUGGG

Species

Fruit fly (Drosophila yakuba)

MiRBase ID

dya-mir-309

Paralogues

Dya-Mir-3-P2 Dya-Mir-3-P3

Orthologues

Aae-Mir-3-o1a Aae-Mir-3-o1b Aga-Mir-3-o1 Dan-Mir-3-P1 Dlo-Mir-3 Dma-Mir-3 Dme-Mir-3-P1 Dmo-Mir-3-P1 Dpu-Mir-3 Dsi-Mir-3-P1 Gpa-Mir-3

Node of Origin (locus)

Drosophila

Node of Origin (family)

Pancrustacea

Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel)

2R: 13623513-13623571 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-3-P1)

Mir-3-P1 2R: 13623513-13623571 [+] UCSC Ensembl
Mir-3-P2 2R: 13623628-13623684 [+] UCSC Ensembl
Mir-279-P1 2R: 13623775-13623848 [+] UCSC Ensembl
Mir-9-P9 2R: 13623927-13623983 [+] UCSC Ensembl
Mir-2-P5 2R: 13624064-13624124 [+] UCSC Ensembl
Mir-2-P6a 2R: 13624211-13624273 [+] UCSC Ensembl
Mir-2-P6b 2R: 13624349-13624410 [+] UCSC Ensembl
Mir-2-P6c 2R: 13624497-13624562 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUCAAAGCAAAGUUUGGAACAGCAAUUAUACGACAAACCUUGUUCUGUUUUGCCAAUUUCCUAGCCAGCACUGGGUAAAGUUUGUCCUAUAAUCCCGAAACGACGACCAGCAGCCAAGU

Get precursor sequence

Structure

        10        20          30        40        50         
AUCAAAGCAAAGUUUGGAACAGCA--|     C       C   UU U  U   CCAAUU 
                          AUUAUA GACAAAC UUG  C GU UUG      \
                          UAAUAU CUGUUUG AAU  G CA GAC      U
UGAACCGACGACCAGCAGCAAAGCCC^     C       A   GG U  C   CGAUCC 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

He	Wh

Star sequence

Dya-Mir-3-P1_5p*

mirBase accession

None

Sequence

0- CGACAAACCUUGUUCUGUUUUG -22

Get sequence

Mature sequence

Dya-Mir-3-P1_3p

mirBase accession

MIMAT0009085

Sequence

37- GCACUGGGUAAAGUUUGUCCUA -59

Get sequence