MirGeneDB 2.1
MirGeneDB ID

Dma-Mir-3

Family name MIR-3 (all species)
Seed CACUGGG
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues
Orthologues Aae-Mir-3-P2a1  Aae-Mir-3-P2a2  Aae-Mir-3-P2b  Bge-Mir-3-P28a-v1  Bge-Mir-3-P28a-v2  Bge-Mir-3-P28b-v1  Bge-Mir-3-P28b-v2  Bge-Mir-3-P29-v1  Bge-Mir-3-P29-v2  Dan-Mir-3-P1  Dan-Mir-3-P2  Dan-Mir-3-P3  Dme-Mir-3-P1  Dme-Mir-3-P2  Dme-Mir-3-P3  Dmo-Mir-3-P1  Dmo-Mir-3-P2  Dmo-Mir-3-P3  Dpu-Mir-3  Dsi-Mir-3-P1  Dsi-Mir-3-P2  Dsi-Mir-3-P3  Dya-Mir-3-P1  Dya-Mir-3-P2  Dya-Mir-3-P3  Hme-Mir-3-P14  Hme-Mir-3-P15  Hme-Mir-3-P16  Hme-Mir-3-P17  Hme-Mir-3-P18  Hme-Mir-3-P19  Hme-Mir-3-P20  Hme-Mir-3-P21  Hme-Mir-3-P22  Hme-Mir-3-P23  Hme-Mir-3-P24  Hme-Mir-3-P25  Hme-Mir-3-P26  Hme-Mir-3-P27  Tca-Mir-3-P4  Tca-Mir-3-P5  Tca-Mir-3-P6  Tca-Mir-3-P7-v1  Tca-Mir-3-P7-v2  Tca-Mir-3-P8  Tca-Mir-3-P9a  Tca-Mir-3-P9b  Tca-Mir-3-P10  Tca-Mir-3-P11  Tca-Mir-3-P12a  Tca-Mir-3-P12b  Tca-Mir-3-P13a  Tca-Mir-3-P13b 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Pancrustacea
Genome context
(DMA_ASM399081)		 NC_046174.1: 2509456-2509516 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCCUGUAAAACGUAAAUCUGGAAUUAGUCUAGGUAAACUUCGCCCAGAUUAGACUUAAUUAUUGCAGUCACUGGGUAAAGUUUGUCCGUUGACUAGGUUCACUUACCUCUUCACACUGAUC
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Structure
        10          20        30          40        50        60
UCCUGUAAAACGUAAAUC--    A      UA-  -|      CG     AUUA    UAAU 
                    UGGA UUAGUC   GG UAAACUU  CCCAG    GACU    U
                    ACUU GAUCAG   CC GUUUGAA  GGGUC    CUGA    A
CUAGUCACACUUCUCCAUUC    G      UUG  U^      AU     A---    CGUU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Star sequence

Dma-Mir-3_5p*
mirBase accessionNone
Sequence 
0- AGGUAAACUUCGCCCAGAUUAGACU -25
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Mature sequence

Dma-Mir-3_3p
mirBase accessionNone
Sequence 
37- UCACUGGGUAAAGUUUGUCCGUUG -61
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