Mir-3

MirGeneDB ID

Dma-Mir-3

Family name

MIR-3 (all species)

Seed

CACUGGG

Species

Large common water flea (Daphnia magna)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-3-o1a Aae-Mir-3-o1b Aae-Mir-3-o2 Aga-Mir-3-o1 Aga-Mir-3-o2 Bge-Mir-3-P28a-v1 Bge-Mir-3-P28a-v2 Bge-Mir-3-P28b-v1 Bge-Mir-3-P28b-v2 Bge-Mir-3-P29-v1 Bge-Mir-3-P29-v2 Dan-Mir-3-P1 Dan-Mir-3-P2 Dan-Mir-3-P3 Dlo-Mir-3 Dme-Mir-3-P1 Dme-Mir-3-P2 Dme-Mir-3-P3 Dmo-Mir-3-P1 Dmo-Mir-3-P2 Dmo-Mir-3-P3 Dpu-Mir-3 Dsi-Mir-3-P1 Dsi-Mir-3-P2 Dsi-Mir-3-P3 Dya-Mir-3-P1 Dya-Mir-3-P2 Dya-Mir-3-P3 Gpa-Mir-3 Hme-Mir-3-P14 Hme-Mir-3-P15 Hme-Mir-3-P16 Hme-Mir-3-P17 Hme-Mir-3-P18 Hme-Mir-3-P19 Hme-Mir-3-P20 Hme-Mir-3-P21 Hme-Mir-3-P22 Hme-Mir-3-P23 Hme-Mir-3-P24 Hme-Mir-3-P25 Hme-Mir-3-P26 Hme-Mir-3-P27 Tca-Mir-3-P4 Tca-Mir-3-P5 Tca-Mir-3-P6 Tca-Mir-3-P7-v1 Tca-Mir-3-P7-v2 Tca-Mir-3-P8 Tca-Mir-3-P9a Tca-Mir-3-P9b Tca-Mir-3-P10 Tca-Mir-3-P11 Tca-Mir-3-P12a Tca-Mir-3-P12b Tca-Mir-3-P13a Tca-Mir-3-P13b

Node of Origin (locus)

Pancrustacea

Node of Origin (family)

Pancrustacea

Genome context
(DMA_ASM399081)

NC_046174.1: 2509456-2509516 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UCCUGUAAAACGUAAAUCUGGAAUUAGUCUAGGUAAACUUCGCCCAGAUUAGACUUAAUUAUUGCAGUCACUGGGUAAAGUUUGUCCGUUGACUAGGUUCACUUACCUCUUCACACUGAUC

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Structure

        10          20        30          40        50        60
UCCUGUAAAACGUAAAUC--    A      UA-  -|      CG     AUUA    UAAU 
                    UGGA UUAGUC   GG UAAACUU  CCCAG    GACU    U
                    ACUU GAUCAG   CC GUUUGAA  GGGUC    CUGA    A
CUAGUCACACUUCUCCAUUC    G      UUG  U^      AU     A---    CGUU 
 .       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

01	02	03	04	05	06	07	08	09	10	11	12	13	14

Star sequence

Dma-Mir-3_5p*

mirBase accession

None

Sequence

0- AGGUAAACUUCGCCCAGAUUAGACU -25

Get sequence

Mature sequence

Dma-Mir-3_3p

mirBase accession

None

Sequence

37- UCACUGGGUAAAGUUUGUCCGUUG -61

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