MirGeneDB 3.0

MirGeneDB ID

Dsi-Mir-3-P2

Family name MIR-3 (all species)
Seed CACUGGG
Species Fruit fly (Drosophila simulans)
MiRBase ID dsi-mir-3
Paralogues Dsi-Mir-3-P1  Dsi-Mir-3-P3 
Orthologues Aae-Mir-3-o2  Aga-Mir-3-o2  Dan-Mir-3-P2  Dlo-Mir-3  Dma-Mir-3  Dme-Mir-3-P2  Dmo-Mir-3-P2  Dpu-Mir-3  Dya-Mir-3-P2  Gpa-Mir-3 
Node of Origin (locus) Drosophila
Node of Origin (family) Pancrustacea
Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)
2R: 16151447-16151503 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-3-P2)
Mir-2-P6c 2R: 16150571-16150636 [-] UCSC Ensembl
Mir-2-P6b 2R: 16150723-16150784 [-] UCSC Ensembl
Mir-2-P6a 2R: 16150863-16150925 [-] UCSC Ensembl
Mir-2-P5 2R: 16151011-16151070 [-] UCSC Ensembl
Mir-9-P9 2R: 16151148-16151204 [-] UCSC Ensembl
Mir-279-P1 2R: 16151283-16151358 [-] UCSC Ensembl
Mir-3-P2 2R: 16151447-16151503 [-] UCSC Ensembl
Mir-3-P1 2R: 16151557-16151615 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUUGUGAACCACCAAAGGUCCCGAUCCUGGGAUGCAUCUUGUGCAGUUAUGUUCCAAUCUCACAUCACUGGGCAAAGUGUGUCUCAAGAUCCUGGCCACAUCGUCGCUACUUCAAA
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Structure
        10          20        30        40        50        
AAUUGUGAACCACCAAA--|   CC    C         UC    G    U   UUCCA 
                   GGUC  GAUC UGGGAUGCA  UUGU CAGU AUG     \
                   CCGG  CUAG ACUCUGUGU  AACG GUCA UAC     A
AAACUUCAUCGCUGCUACA^   UC    A         GA    G    C   ACUCU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Wh
Star sequence

Dsi-Mir-3-P2_5p*

mirBase accessionNone
Sequence
0- GGAUGCAUCUUGUGCAGUUAUG -22
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Mature sequence

Dsi-Mir-3-P2_3p

mirBase accessionMIMAT0008862
Sequence
35- UCACUGGGCAAAGUGUGUCUCA -57
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