MirGeneDB 3.0
53 microRNA genes with seed CACUGGG
Sort by genome coordinates Motifs
MirGeneDB ID ▲ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) 3' NTU  UG  UGUG CNNC
Dlo-Mir-3 None MIR-3 CACUGGG None None NC_087241.1 4525806 4525867 - Pancrustacea Pancrustacea No 1
Dma-Mir-3 None MIR-3 CACUGGG None None NC_046174.1 2509456 2509516 + Pancrustacea Pancrustacea No 1
Dpu-Mir-3 None MIR-3 CACUGGG None None DAPPUscaffold_24 361462 361522 - Pancrustacea Pancrustacea No 1 1
Aga-Mir-3-o1 aga-mir-309 MIR-3 CACUGGG None MIMAT0010112 NC_064601.1 67177915 67177979 - Culicidae Pancrustacea No 1
Aae-Mir-3-o1a aae-mir-309a-1 MIR-3 CACUGGG None MIMAT0014272 supercont1.602 94041 94109 + A. aegypti Pancrustacea No 1
Aae-Mir-3-o1b aae-mir-309a-2 MIR-3 CACUGGG None MIMAT0014272 supercont1.150 907891 907959 + A. aegypti Pancrustacea No 1
Aae-Mir-3-o2 aae-mir-309b MIR-3 CACUGGG MIMAT0014319 MIMAT0014320 supercont1.464 825634 825696 + Culicidae Pancrustacea Unknown 1
Aga-Mir-3-o2 None MIR-3 CACUGGG None None NC_064602.1 42669953 42670018 - Culicidae Pancrustacea No 1
Dan-Mir-3-P1 dan-mir-309 MIR-3 CACUGGG None MIMAT0008453 scaffold_13266 9731119 9731176 + Drosophila Pancrustacea No 1 1
Dme-Mir-3-P1 dme-mir-309 MIR-3 CACUGGG MIMAT0020835 MIMAT0000401 2R 19661710 19661768 - Drosophila Pancrustacea No
Dmo-Mir-3-P1 dmo-mir-309 MIR-3 CACUGGG None MIMAT0008660 scaffold_6496 20937123 20937187 - Drosophila Pancrustacea No
Dsi-Mir-3-P1 dsi-mir-309 MIR-3 CACUGGG None MIMAT0008894 2R 16151557 16151615 - Drosophila Pancrustacea No
Dya-Mir-3-P1 dya-mir-309 MIR-3 CACUGGG None MIMAT0009085 2R 13623513 13623571 + Drosophila Pancrustacea No
Dan-Mir-3-P2 dan-mir-3 MIR-3 CACUGGG None MIMAT0008423 scaffold_13266 9731233 9731293 + Drosophila Pancrustacea No 1 1
Dme-Mir-3-P2 dme-mir-3 MIR-3 CACUGGG MIMAT0020784 MIMAT0000108 2R 19661600 19661656 - Drosophila Pancrustacea No 1
Dmo-Mir-3-P2 dmo-mir-3 MIR-3 CACUGGG None MIMAT0008668 scaffold_6496 20936995 20937055 - Drosophila Pancrustacea No
Dsi-Mir-3-P2 dsi-mir-3 MIR-3 CACUGGG None MIMAT0008862 2R 16151447 16151503 - Drosophila Pancrustacea No 1
Dya-Mir-3-P2 dya-mir-3 MIR-3 CACUGGG None MIMAT0009074 2R 13623628 13623684 + Drosophila Pancrustacea No 1
Dan-Mir-3-P3 dan-mir-318 MIR-3 CACUGGG None MIMAT0008463 scaffold_13340 867217 867275 - Drosophila Pancrustacea No 1
Dme-Mir-3-P3 dme-mir-318 MIR-3 CACUGGG MIMAT0020844 MIMAT0000410 3R 10408308 10408365 + Drosophila Pancrustacea No 1
Dmo-Mir-3-P3 dmo-mir-318 MIR-3 CACUGGG None MIMAT0008684 scaffold_6540 5225350 5225408 + Drosophila Pancrustacea No 1
Dsi-Mir-3-P3 dsi-mir-318 MIR-3 CACUGGG None MIMAT0008907 3R 14842658 14842715 - Drosophila Pancrustacea No 1
Dya-Mir-3-P3 dya-mir-318 MIR-3 CACUGGG None MIMAT0009079 3R 10262545 10262602 + Drosophila Pancrustacea No 1
Tca-Mir-3-P5 tca-mir-309b MIR-3 CACUGGG MIMAT0018886 MIMAT0018887 LG5 7457453 7457508 + T. castaneum Pancrustacea No 1 1
Tca-Mir-3-P6 tca-mir-309c MIR-3 CACUGGG MIMAT0045526 MIMAT0045527 LG5 7457335 7457391 + T. castaneum Pancrustacea No 1
Tca-Mir-3-P7-v1 None MIR-3 CACUGGG None None LG2 364450 364510 - T. castaneum Pancrustacea No 1
Tca-Mir-3-P8 None MIR-3 CACUGGG None None LG2 1143938 1143997 + T. castaneum Pancrustacea No 1
Tca-Mir-3-P9a None MIR-3 CACUGGG None None LG2 342886 342945 - T. castaneum Pancrustacea No 1
Tca-Mir-3-P9b None MIR-3 CACUGGG None None KQ971812 4156 4215 - T. castaneum Pancrustacea No 1
Tca-Mir-3-P10 None MIR-3 CACUGGG None None LG2 1144355 1144413 + T. castaneum Pancrustacea No 1
Tca-Mir-3-P11 None MIR-3 GGUCUAU None None LG2 1140475 1140533 + T. castaneum Pancrustacea No
Tca-Mir-3-P12a None MIR-3 CACUGGG None None KQ972170 29279 29337 + T. castaneum Pancrustacea No 1
Tca-Mir-3-P12b None MIR-3 CACUGGG None None KQ972170 8053 8111 - T. castaneum Pancrustacea No 1
Tca-Mir-3-P13a None MIR-3 CACUGGG None None LG2 1145669 1145727 + T. castaneum Pancrustacea No 1
Tca-Mir-3-P13b None MIR-3 CACUGGG None None LG2 1141776 1141834 + T. castaneum Pancrustacea No 1
Hme-Mir-3-P14 None MIR-3 CACUGGG None None HE671859 113699 113757 - H. melpomene Pancrustacea No 1
Hme-Mir-3-P15 None MIR-3 CACUGGG None None HE671859 113451 113508 - H. melpomene Pancrustacea No 1 1
Hme-Mir-3-P16 None MIR-3 CACUGGG None None HE671859 113306 113364 - H. melpomene Pancrustacea No 1 1
Hme-Mir-3-P17 None MIR-3 CACUGGG None None HE671859 113173 113233 - H. melpomene Pancrustacea No 1
Hme-Mir-3-P18 None MIR-3 CACUGGG None None HE671859 112729 112787 - H. melpomene Pancrustacea No 1
Hme-Mir-3-P19 None MIR-3 CACUGGG None None HE671859 112455 112513 - H. melpomene Pancrustacea No 1
Hme-Mir-3-P20 None MIR-3 CACUGGG None None HE671859 112283 112342 - H. melpomene Pancrustacea No
Hme-Mir-3-P21 None MIR-3 CACUGGG None None HE671859 112176 112234 - H. melpomene Pancrustacea No 1
Hme-Mir-3-P23 None MIR-3 UAGUCAU None None HE671859 111487 111543 - H. melpomene Pancrustacea No 1
Hme-Mir-3-P24 None MIR-3 CACUGGG None None HE671859 110937 110990 - H. melpomene Pancrustacea No 1
Hme-Mir-3-P25 None MIR-3 CACUGGG None None HE671859 110796 110850 - H. melpomene Pancrustacea No 1
Hme-Mir-3-P26 None MIR-3 CACUGGG None None HE671859 110635 110693 - H. melpomene Pancrustacea No
Hme-Mir-3-P27 hme-mir-2733 MIR-3 CACUGGG None MIMAT0024951 HE671859 110477 110535 - H. melpomene Pancrustacea Unknown
Bge-Mir-3-P28a-v1 None MIR-3 CACUGGG None None KZ618317.1 56244 56302 - B. germanica Pancrustacea No 1
Bge-Mir-3-P28b-v1 None MIR-3 CACUGGG None None KZ614999.1 53646 53704 - B. germanica Pancrustacea No 1
Bge-Mir-3-P29-v1 None MIR-3 CACUGGG None None KZ614999.1 54531 54589 - B. germanica Pancrustacea No 1
Dma-Mir-12608 None MIR-12608 GGGGGAA None None NC_046175.1 6286446 6286507 - Daphnia Daphnia No
Dpu-Mir-12608 None MIR-12608 CACUGGG None None CAJVNM010000013.1:1301350-1301500 54 115 + Daphnia Daphnia No 1

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