MirGeneDB ID | Dan-Mir-3-P3 |
Family name |
MIR-3 (all species) |
Seed |
CACUGGG |
Species |
Fruit fly (Drosophila ananassae) |
MiRBase ID |
dan-mir-318
|
Paralogues |
Dan-Mir-3-P1
Dan-Mir-3-P2
|
Orthologues |
Dlo-Mir-3
Dma-Mir-3
Dme-Mir-3-P3
Dmo-Mir-3-P3
Dpu-Mir-3
Dsi-Mir-3-P3
Dya-Mir-3-P3
Gpa-Mir-3
|
Node of Origin (locus) |
Drosophila
|
Node of Origin (family) |
Pancrustacea
|
Genome context (Dana_caf1) |
scaffold_13340: 867217-867275 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUCCCCAGGGUCCUCCGGUUUCAAUUUGUGGGAUACACACGGUUCAGUUGUGUCACUUUUGCGAGCAUCACUGGGCUUUGUUUAUCUCAUAAGACUGAAAUUUGUUCAACUUUACAUUC
Get precursor sequence
|
Structure | 10 20 30 40 50
UUCCCCAGGGUCCUCCG- A-| C C U UCACUU
GUUUCA UUUGUGGGAUA ACA GGUUCAGU GUG \
UAAAGU GAAUACUCUAU UGU UCGGGUCA UAC U
CUUACAUUUCAACUUGUU CA^ U U C GAGCGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Dan-Mir-3-P3_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GGAUACACACGGUUCAGUUGUG -22
Get sequence
|
Mature sequence |
Dan-Mir-3-P3_3p |
mirBase accession | MIMAT0008463 |
Sequence |
37- UCACUGGGCUUUGUUUAUCUCA -59
Get sequence
|