Mir-3

MirGeneDB ID

Dpu-Mir-3

Family name

MIR-3 (all species)

Seed

CACUGGG

Species

Common water flea (Daphnia pulex)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-3-o1a Aae-Mir-3-o1b Aae-Mir-3-o2 Aga-Mir-3-o1 Aga-Mir-3-o2 Bge-Mir-3-P28a-v1 Bge-Mir-3-P28a-v2 Bge-Mir-3-P28b-v1 Bge-Mir-3-P28b-v2 Bge-Mir-3-P29-v1 Bge-Mir-3-P29-v2 Dan-Mir-3-P1 Dan-Mir-3-P2 Dan-Mir-3-P3 Dlo-Mir-3 Dma-Mir-3 Dme-Mir-3-P1 Dme-Mir-3-P2 Dme-Mir-3-P3 Dmo-Mir-3-P1 Dmo-Mir-3-P2 Dmo-Mir-3-P3 Dsi-Mir-3-P1 Dsi-Mir-3-P2 Dsi-Mir-3-P3 Dya-Mir-3-P1 Dya-Mir-3-P2 Dya-Mir-3-P3 Gpa-Mir-3 Hme-Mir-3-P14 Hme-Mir-3-P15 Hme-Mir-3-P16 Hme-Mir-3-P17 Hme-Mir-3-P18 Hme-Mir-3-P19 Hme-Mir-3-P20 Hme-Mir-3-P21 Hme-Mir-3-P22 Hme-Mir-3-P23 Hme-Mir-3-P24 Hme-Mir-3-P25 Hme-Mir-3-P26 Hme-Mir-3-P27 Tca-Mir-3-P4 Tca-Mir-3-P5 Tca-Mir-3-P6 Tca-Mir-3-P7-v1 Tca-Mir-3-P7-v2 Tca-Mir-3-P8 Tca-Mir-3-P9a Tca-Mir-3-P9b Tca-Mir-3-P10 Tca-Mir-3-P11 Tca-Mir-3-P12a Tca-Mir-3-P12b Tca-Mir-3-P13a Tca-Mir-3-P13b

Node of Origin (locus)

Pancrustacea

Node of Origin (family)

Pancrustacea

Genome context
(Daphnia_pulex.V1.0)

DAPPUscaffold_24: 361462-361522 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

AAGAAAUGAAAAAUAACCUGGUAUUAGUCUAGGUGAACUUUGCCCAGAUUAGACUUGUAAUUGUUAGUCACUGGGUAAAGUUUGUCCGUUGACUAGUUCCACUUACCUCUUCUGCCUGUUC

Get precursor sequence

Structure

        10          20        30          40        50        60
AAGAAAUGAAAAAUAACC--   U       UA-  -|             AUUA    UGUA 
                    UGG AUUAGUC   GG UGAACUUUGCCCAG    GACU    A
                    ACC UGAUCAG   CC GUUUGAAAUGGGUC    CUGA    U
CUUGUCCGUCUUCUCCAUUC   U       UUG  U^             A---    UUGU 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Star sequence

Dpu-Mir-3_5p*

mirBase accession

None

Sequence

0- AGGUGAACUUUGCCCAGAUUAGACU -25

Get sequence

Mature sequence

Dpu-Mir-3_3p

mirBase accession

None

Sequence

37- UCACUGGGUAAAGUUUGUCCGUUG -61

Get sequence