Mir-3-o2

MirGeneDB ID

Aga-Mir-3-o2

Family name

MIR-3 (all species)

Seed

CACUGGG

Species

African malaria mosquito (Anopheles gambiae)

MiRBase ID

Paralogues

Aga-Mir-3-o1

Orthologues

Aae-Mir-3-o2 Dan-Mir-3-P2 Dlo-Mir-3 Dma-Mir-3 Dme-Mir-3-P2 Dmo-Mir-3-P2 Dpu-Mir-3 Dsi-Mir-3-P2 Dya-Mir-3-P2 Gpa-Mir-3

Node of Origin (locus)

Culicidae

Node of Origin (family)

Pancrustacea

Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)

NC_064602.1: 42669953-42670018 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-3-o2)

Mir-2-P5a1 NC_064602.1: 42670118-42670173 [-] Ensembl
Mir-2-P5b NC_064602.1: 42670305-42670366 [-] Ensembl
Mir-279-P1a NC_064602.1: 42670645-42670715 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

ACUAAUGCAACUUCUAAUCCACUUGAAGAUGCGACAAACUCCGUCCAGAGGGUGUCCGAUUUCAAUGAACUCAUCACUGGGCAAAGUUUGUCGCAUAAACAAGCCGAAGUACGACUGGAAAAACAU

Get precursor sequence

Structure

        10          20        30        40        50        60   
ACUAAUGCAACUUCUAA--| CA    AAG            CC      AG   GUCCGAUUU 
                   UC  CUUG   AUGCGACAAACU  GUCCAG  GGU         \
                   AG  GAAC   UACGCUGUUUGA  CGGGUC  CUA         C
UACAAAAAGGUCAGCAUGA^ CC    AAA            AA      A-   CUCAAGUAA 
    120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ab	Ab	He	He	Mi	Mi	Ov	Ov	Ov

Star sequence

Aga-Mir-3-o2_5p* (predicted)

mirBase accession

None

Sequence

0- GCGACAAACUCCGUCCAGAGGGU -23

Get sequence

Mature sequence

Aga-Mir-3-o2_3p

mirBase accession

None

Sequence

43- UCACUGGGCAAAGUUUGUCGCAU -66

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