Mir-3-P2

MirGeneDB ID

Dan-Mir-3-P2

Family name

MIR-3 (all species)

Seed

CACUGGG

Species

Fruit fly (Drosophila ananassae)

MiRBase ID

dan-mir-3

Paralogues

Dan-Mir-3-P1 Dan-Mir-3-P3

Orthologues

Aae-Mir-3-o2 Aga-Mir-3-o2 Dlo-Mir-3 Dma-Mir-3 Dme-Mir-3-P2 Dmo-Mir-3-P2 Dpu-Mir-3 Dsi-Mir-3-P2 Dya-Mir-3-P2 Gpa-Mir-3

Node of Origin (locus)

Drosophila

Node of Origin (family)

Pancrustacea

Genome context
(Dana_caf1)

scaffold_13266: 9731233-9731293 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-3-P2)

Mir-3-P1 scaffold_13266: 9731119-9731176 [+] Ensembl
Mir-3-P2 scaffold_13266: 9731233-9731293 [+] Ensembl
Mir-279-P1 scaffold_13266: 9731371-9731449 [+] Ensembl
Mir-9-P9 scaffold_13266: 9731536-9731592 [+] Ensembl
Mir-2-P5 scaffold_13266: 9731684-9731747 [+] Ensembl
Mir-2-P6a scaffold_13266: 9731826-9731883 [+] Ensembl
Mir-2-P6b scaffold_13266: 9731970-9732041 [+] Ensembl
Mir-2-P6c scaffold_13266: 9732130-9732191 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UCUGUGAGCCCCCAACUGGCUACGAUCUUGGGACGCAUUUUGUGCAGUUAUGCACCAAAAAUAUAUCCAUCACUGGGCAAAGUGUGUCUCAGGAUCUUGGCCAUCUCAACGAAGAAUCAAU

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Structure

        10          20        30        40        50          
UCUGUGAGCCCCCAACU--|    C                    G    U   CACCAAA 
                   GGCUA GAUCUUGGGACGCAUUUUGU CAGU AUG       \
                   CCGGU CUAGGACUCUGUGUGAAACG GUCA UAC       A
UAACUAAGAAGCAACUCUA^    U                    G    C   CUAUAUA 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Fe

Star sequence

Dan-Mir-3-P2_5p*

mirBase accession

None

Sequence

0- GGACGCAUUUUGUGCAGUUAUG -22

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Mature sequence

Dan-Mir-3-P2_3p

mirBase accession

MIMAT0008423

Sequence

39- UCACUGGGCAAAGUGUGUCUCA -61

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