MirGeneDB 3.0

MirGeneDB ID

Dan-Mir-9-P9

Family name MIR-9 (all species)
Seed UAAAGCU
Species Fruit fly (Drosophila ananassae)
MiRBase ID dan-mir-4
Paralogues Dan-Mir-9-P10  Dan-Mir-9-P11  Dan-Mir-9-P12-v1  Dan-Mir-9-P12-v2  Dan-Mir-9-P13 
Orthologues Agr-Mir-9  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dgr-Mir-9  Dlo-Mir-9-P9  Dma-Mir-9-P9  Dme-Mir-9-P9  Dmo-Mir-9-P9  Dpu-Mir-9-P9  Dsi-Mir-9-P9  Dya-Mir-9-P9  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gsa-Mir-9  Gsp-Mir-9  Hme-Mir-9-P9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  Tca-Mir-9-P9a  Tca-Mir-9-P9b-v1  Tca-Mir-9-P9b-v2  Tca-Mir-9-P9c-v1  Tca-Mir-9-P9c-v2  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Bilateria
Genome context
(Dana_caf1)
scaffold_13266: 9731536-9731592 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-9-P9)
Mir-3-P1 scaffold_13266: 9731119-9731176 [+] Ensembl
Mir-3-P2 scaffold_13266: 9731233-9731293 [+] Ensembl
Mir-279-P1 scaffold_13266: 9731371-9731449 [+] Ensembl
Mir-9-P9 scaffold_13266: 9731536-9731592 [+] Ensembl
Mir-2-P5 scaffold_13266: 9731684-9731747 [+] Ensembl
Mir-2-P6a scaffold_13266: 9731826-9731883 [+] Ensembl
Mir-2-P6b scaffold_13266: 9731970-9732041 [+] Ensembl
Mir-2-P6c scaffold_13266: 9732130-9732191 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUAUACCAAUAUAAAGGUUGCAAUUAGUUUCUUUGGUCGUCCAGCCUUAGGUGACUUCUCUGAUCAUAAAGCUAGACAACCAUUGAAGUUCGUUGUGGCAAUUGCGGCGCUUAUUAA
Get precursor sequence
Structure
        10          20        30        40        50         
AUAUACCAAUAUAAAGG--|UG    U GU   UU    C   C   CUUAG    CUUC 
                   U  CAAU A  UUC  UGGU GUC AGC     GUGA    \
                   G  GUUG U  AAG  ACCA CAG UCG     UACU    U
AAUUAUUCGCGGCGUUAAC^GU    C UG   UU    A   A   AAA--    AGUC 
     110       100        90        80        70          60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe
Star sequence

Dan-Mir-9-P9_5p*

mirBase accessionNone
Sequence
0- CUUUGGUCGUCCAGCCUUAGGUGA -24
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Mature sequence

Dan-Mir-9-P9_3p

mirBase accessionMIMAT0008427
Sequence
35- AUAAAGCUAGACAACCAUUGAA -57
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