Mir-9-P9c-v2

MirGeneDB ID

Tca-Mir-9-P9c-v2

Family name

MIR-9 (all species)

Seed

UUUGGUG

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

tca-mir-9e

Paralogues

Tca-Mir-9-P9a Tca-Mir-9-P9b-v1 Tca-Mir-9-P9b-v2 Tca-Mir-9-P9c-v1 Tca-Mir-9-P10 Tca-Mir-9-P12

Orthologues

Agr-Mir-9 Bfl-Mir-9 Bko-Mir-9 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cte-Mir-9 Dan-Mir-9-P9 Dgr-Mir-9 Dlo-Mir-9-P9 Dma-Mir-9-P9 Dme-Mir-9-P9 Dmo-Mir-9-P9 Dpu-Mir-9-P9 Dsi-Mir-9-P9 Dya-Mir-9-P9 Eba-Mir-9 Egr-Mir-9 Esc-Mir-9 Gsa-Mir-9 Gsp-Mir-9 Hme-Mir-9-P9 Hmi-Mir-9 Hru-Mir-9 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Llo-Mir-9 Mom-Mir-9 Npo-Mir-9 Obi-Mir-9 Ofu-Mir-9 Ovu-Mir-9 Pau-Mir-9 Pdu-Mir-9 Pmi-Mir-9 Pve-Mir-9 Rph-Mir-9 Sma-Mir-9 Snu-Mir-9 Spu-Mir-9 War-Mir-9 Xbo-Mir-9

Node of Origin (locus)

T. castaneum

Node of Origin (family)

Bilateria

Genome context
(Tcas5.2)

LG9: 11088-11145 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-9-P9c-v2)

Mir-2-P5e LG9: 10977-11036 [-] Ensembl
Mir-9-P9c-v1 LG9: 11087-11146 [-] Ensembl
Mir-9-P9c-v2 LG9: 11088-11145 [-] Ensembl
Mir-279-P1d LG9: 11214-11274 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UGCAACAGGUUGCAAGUCGGAUAUAUUCUUCUUUGGUGAUCUAGUUGUAUGAGUGUUUUAUAUAUCAUAAAGCUGGUUCAGCAAAGCAGAUUGCAUUCGACUCUUCGACGAGCCGAGC

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Structure

        10          20        30        40        50        
UGCAACAGGUUGCAAGU--|    A  U   U     G   U      G     GUGUU 
                   CGGAU UA UCU CUUUG UGA CUAGUU UAUGA     U
                   GCUUA GU AGA GAAAC ACU GGUCGA AUACU     U
CGAGCCGAGCAGCUUCUCA^    C  U   C     G   U      A     AUAUA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Ea	Em	Em	Em	Em	Em	Fe	Fe	Fe	Fe	Oo

Mature sequence

Tca-Mir-9-P9c-v2_5p

mirBase accession

MIMAT0023581

Sequence

0- CUUUGGUGAUCUAGUUGUAUGA -22

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Star sequence

Tca-Mir-9-P9c-v2_3p*

mirBase accession

MIMAT0023582

Sequence

36- AUAAAGCUGGUUCAGCAAAGCA -58

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