MirGeneDB 3.0
MirGeneDB ID

Dpu-Mir-9-P9

Family name MIR-9 (all species)
Seed CUUUGGU
Species Common water flea (Daphnia pulex)
MiRBase ID
Paralogues Dpu-Mir-9-P10 
Orthologues Agr-Mir-9  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dan-Mir-9-P9  Dgr-Mir-9  Dlo-Mir-9-P9  Dma-Mir-9-P9  Dme-Mir-9-P9  Dmo-Mir-9-P9  Dsi-Mir-9-P9  Dya-Mir-9-P9  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gsa-Mir-9  Gsp-Mir-9  Hme-Mir-9-P9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  Tca-Mir-9-P9a  Tca-Mir-9-P9b-v1  Tca-Mir-9-P9b-v2  Tca-Mir-9-P9c-v1  Tca-Mir-9-P9c-v2  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Bilateria
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_32: 69575-69633 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-9-P9)		 Mir-965 DAPPUscaffold_32: 27782-27843 [-] Ensembl
Mir-279-P1d DAPPUscaffold_32: 68663-68726 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUACAGGUUGUAUUCUUAUUAUUGCUUCUUUCUUUGGUGGUCUAGCUGUAUGAGGUUUAUAAGUUCAUAAAGCUAGAUCAGCAAGGCAACAAGUGGAAUAGUUUUCGACGUUUACAAUG
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Structure
        10        20          30        40        50         
UUACAGGUUGUAUUCUUAUUA--|UG   C  U     G          G     GGUUU 
                       U  CUU UU CUUUG UGGUCUAGCU UAUGA     \
                       G  GAA AA GGAAC ACUAGAUCGA AUACU     A
GUAACAUUUGCAGCUUUUGAUAA^GU   C  C     G          A     UGAAU 
       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Dpu-Mir-9-P9_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUGGUCUAGCUGUAUGA -23
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Star sequence

Dpu-Mir-9-P9_3p*
mirBase accessionNone
Sequence 
36- AUAAAGCUAGAUCAGCAAGGCAA -59
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