MirGeneDB 3.0
MirGeneDB ID

Dpu-Mir-9-P10

Family name MIR-9 (all species)
Seed CUUUGGU
Species Common water flea (Daphnia pulex)
MiRBase ID dpu-mir-9
Paralogues Dpu-Mir-9-P9 
Orthologues Aae-Mir-9-P10a  Aae-Mir-9-P10b  Aga-Mir-9-P10  Agr-Mir-9  Bfl-Mir-9  Bge-Mir-9-P10  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dan-Mir-9-P10  Dgr-Mir-9  Dlo-Mir-9-P10  Dma-Mir-9-P10  Dme-Mir-9-P10  Dmo-Mir-9-P10  Dsi-Mir-9-P10  Dya-Mir-9-P10  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gpa-Mir-9-P10  Gsa-Mir-9  Gsp-Mir-9  Hme-Mir-9-P10  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  Tca-Mir-9-P10  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Bilateria
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_2: 1526213-1526273 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CGUGUCGUGGUCGUCAUGGCGCUGCUUUUUUCUUUGGUUAUCUAGCUGUAUGAGUGUUAGAAGACGUCAUAAAGCUAGGUUACCAAAGUUAAGAACUGCCCCUCUUCAUCGGCUAUUUUCU
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Structure
        10            20        30        40        50          
CGUGUCGUGGUCGUCAU----|   CUG   UUUU       U        G     GUGUUA 
                     GGCG   CUU    CUUUGGU AUCUAGCU UAUGA      \
                     CCGU   GAA    GAAACCA UGGAUCGA AUACU      G
UCUUUUAUCGGCUACUUCUCC^   CAA   UU--       U        A     GCAGAA 
 .       110       100        90          80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Dpu-Mir-9-P10_5p
mirBase accessionMIMAT0012671
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Star sequence

Dpu-Mir-9-P10_3p*
mirBase accessionNone
Sequence 
38- AUAAAGCUAGGUUACCAAAGUUA -61
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