MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-9-P9a

Family name MIR-9 (all species)
Seed CUUUGGU
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-9c
Paralogues Tca-Mir-9-P9b-v1  Tca-Mir-9-P9b-v2  Tca-Mir-9-P9c-v1  Tca-Mir-9-P9c-v2  Tca-Mir-9-P10  Tca-Mir-9-P12 
Orthologues Agr-Mir-9  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dan-Mir-9-P9  Dgr-Mir-9  Dlo-Mir-9-P9  Dma-Mir-9-P9  Dme-Mir-9-P9  Dmo-Mir-9-P9  Dpu-Mir-9-P9  Dsi-Mir-9-P9  Dya-Mir-9-P9  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gsa-Mir-9  Gsp-Mir-9  Hme-Mir-9-P9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) T. castaneum
Node of Origin (family) Bilateria
Genome context
(Tcas5.2)		 LG3: 15689817-15689876 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-9-P9a)		 Mir-3841 LG3: 15689576-15689634 [+] Ensembl
Mir-3840 LG3: 15689698-15689754 [+] Ensembl
Mir-9-P9a LG3: 15689817-15689876 [+] Ensembl
Mir-2-P5c LG3: 15689938-15689994 [+] Ensembl
Mir-279-P1c LG3: 15690069-15690126 [+] Ensembl
Mir-3843 LG3: 15690171-15690228 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UACUUGUGAUUUUGCUAACGCGUUAUCACUUCUUUGGUGAUCUAGCCGUGUGAAUUAUUUUUGAAAUCACGCGUCUAAGUCGCCAAGAUUUGAUGAUGUGUCUAACAACUGGAGAUUUAA
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Structure
        10          20        30        40        50          
UACUUGUGAUUUUGCUA--|          CU    U     UC   C       AUUAUU 
                   ACGCGUUAUCA  UCUU GGUGA  UAG CGUGUGA      \
                   UGUGUAGUAGU  AGAA CCGCU  AUC GCGCACU      U
AAUUUAGAGGUCAACAAUC^          UU    -     GA   U       AAAGUU 
.       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-9-P9a_5p
mirBase accessionMIMAT0018714
Sequence 
0- UCUUUGGUGAUCUAGCCGUGUGA -23
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Star sequence

Tca-Mir-9-P9a_3p*
mirBase accessionMIMAT0018715
Sequence 
38- ACGCGUCUAAGUCGCCAAGAUU -60
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