Mir-2-P5c

MirGeneDB ID

Tca-Mir-2-P5c

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

tca-mir-2944a

Paralogues

Tca-Mir-2-P1-v1 Tca-Mir-2-P1-v2 Tca-Mir-2-P2a Tca-Mir-2-P2b Tca-Mir-2-P3-v1 Tca-Mir-2-P3-v2 Tca-Mir-2-P4-v1 Tca-Mir-2-P4-v2 Tca-Mir-2-P5d Tca-Mir-2-P5e Tca-Mir-2-P7 Tca-Mir-2-P8

Orthologues

Cel-Mir-2-o5 Dan-Mir-2-P5 Dlo-Mir-2-P5 Dma-Mir-2-P5 Dme-Mir-2-P5 Dmo-Mir-2-P5 Dpu-Mir-2-P5 Dsi-Mir-2-P5 Dya-Mir-2-P5 Gpa-Mir-2-P5-v1 Gpa-Mir-2-P5-v2 Gsp-Mir-2 Ple-Mir-2

Node of Origin (locus)

T. castaneum

Node of Origin (family)

Protostomia

Genome context
(Tcas5.2)

LG3: 15689938-15689994 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P5c)

Mir-3841 LG3: 15689576-15689634 [+] Ensembl
Mir-3840 LG3: 15689698-15689754 [+] Ensembl
Mir-9-P9a LG3: 15689817-15689876 [+] Ensembl
Mir-2-P5c LG3: 15689938-15689994 [+] Ensembl
Mir-279-P1c LG3: 15690069-15690126 [+] Ensembl
Mir-3843 LG3: 15690171-15690228 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GAUGUGUUUUCACAACUCGCUGAAACUGUGGAGGAACUAUUGGUGUGAUUUGUUCAUUUAAUCAUAUCACAGCCAUUAGUUACUUCACAGUUUCAGUAUUUUCUACACUGGAGUUAG

Get precursor sequence

Structure

        10          20        30        40         50       
GAUGUGUUUUCACAACUC--               G     U   -|     U  UUCA 
                    GCUGAAACUGUGGAG AACUA UGG UGUGAU UG    U
                    UGACUUUGACACUUC UUGAU ACC ACACUA AC    U
GAUUGAGGUCACAUCUUUUA               A     U   G^     U  UAAU 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ea	Em	Em	Em	Em	Em	Fe	Fe	Fe	Fe	Oo

Star sequence

Tca-Mir-2-P5c_5p*

mirBase accession

MIMAT0018718

Sequence

0- GAGGAACUAUUGGUGUGAUUUG -22

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Mature sequence

Tca-Mir-2-P5c_3p

mirBase accession

MIMAT0018719

Sequence

34- UAUCACAGCCAUUAGUUACUUCA -57

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