Mir-2-P5

MirGeneDB ID

Dme-Mir-2-P5

Family name

MIR-2 (all species)

Seed

AAGGAAC

Species

Fruit fly (Drosophila melanogaster)

MiRBase ID

dme-mir-5

Paralogues

Dme-Mir-2-P1-v1 Dme-Mir-2-P1-v2 Dme-Mir-2-P2a Dme-Mir-2-P2b1 Dme-Mir-2-P2b2 Dme-Mir-2-P3a Dme-Mir-2-P3b Dme-Mir-2-P4a-v1 Dme-Mir-2-P4a-v2 Dme-Mir-2-P4b-v1 Dme-Mir-2-P4b-v2 Dme-Mir-2-P6a Dme-Mir-2-P6b Dme-Mir-2-P6c Dme-Mir-2-P7 Dme-Mir-2-P8-v1 Dme-Mir-2-P8-v2 Dme-Mir-2-P9-v1 Dme-Mir-2-P9-v2

Orthologues

Aae-Mir-2-P5a Aae-Mir-2-P5b Aga-Mir-2-P5a1 Aga-Mir-2-P5a2 Aga-Mir-2-P5b Cel-Mir-2-o5 Dan-Mir-2-P5 Dlo-Mir-2-P5 Dma-Mir-2-P5 Dmo-Mir-2-P5 Dpu-Mir-2-P5 Dsi-Mir-2-P5 Dya-Mir-2-P5 Gpa-Mir-2-P5-v1 Gpa-Mir-2-P5-v2 Gsp-Mir-2 Ple-Mir-2 Tca-Mir-2-P5c Tca-Mir-2-P5d Tca-Mir-2-P5e

Node of Origin (locus)

Pancrustacea

Node of Origin (family)

Protostomia

Genome context
(Drosophila_melanogaster_BDGP6)

2R: 19661162-19661222 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P5)

Mir-4983 2R: 19637431-19637502 [+] UCSC Ensembl
Mir-2-P6c 2R: 19660722-19660787 [-] UCSC Ensembl
Mir-2-P6b 2R: 19660874-19660935 [-] UCSC Ensembl
Mir-2-P6a 2R: 19661012-19661074 [-] UCSC Ensembl
Mir-2-P5 2R: 19661162-19661222 [-] UCSC Ensembl
Mir-9-P9 2R: 19661300-19661356 [-] UCSC Ensembl
Mir-279-P1 2R: 19661435-19661509 [-] UCSC Ensembl
Mir-3-P2 2R: 19661600-19661656 [-] UCSC Ensembl
Mir-3-P1 2R: 19661710-19661768 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGAUCCCCAAAUUCAUCGGGCCAUUCGCUAAAAGGAACGAUCGUUGUGAUAUGAGUUGUUUCCUAACAUAUCACAGUGAUUUUCCUUUAUAACGCAUGUUUAAAGUCCACAACUCAUCAAG

Get precursor sequence

Structure

        10        20          30         40        50          
UGAUCCCCAAAUUCAUCGGGC--   U  C  -|      C               AGUUGU 
                       CAU CG UA AAAGGAA GAUCGUUGUGAUAUG      \
                       GUA GC AU UUUCCUU UUAGUGACACUAUAC      U
GAACUACUCAACACCUGAAAUUU   C  A  A^      -               AAUCCU 
 .       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	He	He	La	Ov	Sa	Wh

Mature sequence

Dme-Mir-2-P5_5p

mirBase accession

MIMAT0000110

Sequence

0- AAAGGAACGAUCGUUGUGAUAUG -23

Get sequence

Proposed targets

microrna.org: MIMAT0000110
TargetScanFly: dme-miR-5

Star sequence

Dme-Mir-2-P5_3p*

mirBase accession

MIMAT0020786

Sequence

38- UAUCACAGUGAUUUUCCUUUAUA -61

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