Mir-2-o5

MirGeneDB ID

Cel-Mir-2-o5

Family name

MIR-2 (all species)

Seed

UUUCAUU

Species

Roundworm (Caenorhabditis elegans)

MiRBase ID

cel-mir-797

Paralogues

Cel-Mir-2-o3 Cel-Mir-2-o4 Cel-Mir-2-P11

Orthologues

Aae-Mir-2-P5a Aae-Mir-2-P5b Aga-Mir-2-P5a1 Aga-Mir-2-P5a2 Aga-Mir-2-P5b Dan-Mir-2-P5 Dlo-Mir-2-P5 Dma-Mir-2-P5 Dme-Mir-2-P5 Dmo-Mir-2-P5 Dpu-Mir-2-P5 Dsi-Mir-2-P5 Dya-Mir-2-P5 Gpa-Mir-2-P5-v1 Gpa-Mir-2-P5-v2 Gsp-Mir-2 Ple-Mir-2 Tca-Mir-2-P5c Tca-Mir-2-P5d Tca-Mir-2-P5e

Node of Origin (locus)

C. elegans

Node of Origin (family)

Protostomia

Genome context
(ce11)

chrX: 4757123-4757186 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-2-o5)

Mir-279-P13 chrX: 4756991-4757052 [+] UCSC Ensembl
Mir-2-o5 chrX: 4757123-4757186 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCGAGCACGAUGACCCCGUCCAAUGGACGAUAUCACAGCAAUCACAAUGAGAAGAAUACAUCUAGAUACUCUUUUCAUUGGUUUCUGUGAAAUCGUAUUUGAAUGGAAAGUUUUAUAUUGAAGA

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Structure

        10        20           30        40        50        60  
UCGAGCACGAUGACCCCGUC---|  UGG     A      C  UCA           AUACAU 
                       CAA   ACGAU UCACAG AA   CAAUGAGAAGA      C
                       GUU   UGCUA AGUGUC UU   GUUACUUUUCU      U
AGAAGUUAUAUUUUGAAAGGUAA^  UA-     A      -  UG-           CAUAGA 
  120       110       100         90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Da	Ea	Mi	Wi	Yo	Yo

Star sequence

Cel-Mir-2-o5_5p*

mirBase accession

MIMAT0004232

Sequence

0- UAUCACAGCAAUCACAAUGAGAAGA -25

Get sequence

Proposed targets

microrna.org: MIMAT0004232
TargetScanWorm: cel-miR-797

Mature sequence

Cel-Mir-2-o5_3p

mirBase accession

MIMAT0015241

Sequence

41- UUUUCAUUGGUUUCUGUGAAAUC -64

Get sequence

Proposed targets

microrna.org: MIMAT0015241