MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-2-P5e

Family name MIR-2 (all species)
Seed AUCACAG
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-2944c
Paralogues Tca-Mir-2-P1-v1  Tca-Mir-2-P1-v2  Tca-Mir-2-P2a  Tca-Mir-2-P2b  Tca-Mir-2-P3-v1  Tca-Mir-2-P3-v2  Tca-Mir-2-P4-v1  Tca-Mir-2-P4-v2  Tca-Mir-2-P5c  Tca-Mir-2-P5d  Tca-Mir-2-P7  Tca-Mir-2-P8 
Orthologues Cel-Mir-2-o5  Dan-Mir-2-P5  Dlo-Mir-2-P5  Dma-Mir-2-P5  Dme-Mir-2-P5  Dmo-Mir-2-P5  Dpu-Mir-2-P5  Dsi-Mir-2-P5  Dya-Mir-2-P5  Gpa-Mir-2-P5-v1  Gpa-Mir-2-P5-v2  Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) T. castaneum
Node of Origin (family) Protostomia
Genome context
(Tcas5.2)		 LG9: 10977-11036 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P5e)		 Mir-2-P5e LG9: 10977-11036 [-] Ensembl
Mir-9-P9c-v1 LG9: 11087-11146 [-] Ensembl
Mir-9-P9c-v2 LG9: 11088-11145 [-] Ensembl
Mir-279-P1d LG9: 11214-11274 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GAGCCGAGCGACACUCAGGGAAUCUGGCUUGAAGGAACUUCUGGUGUGAUAUGUAUUUAUCAAUAUAUCACAGCCAGUAGUUACCUACGAAAUGGGUUCCCGAUUGCAACAGCAUCAUUU
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Structure
        10          20        30         40         50        
GAGCCGAGCGACACUCA--         GC   A   -    U    -|        UAUU 
                   GGGAAUCUG  UUG AGG AACU CUGG UGUGAUAUG    U
                   CCCUUGGGU  AGC UCC UUGA GACC ACACUAUAU    A
UUUACUACGACAACGUUAG         AA   A   A    U    G^        AACU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-2-P5e_5p*
mirBase accessionMIMAT0018810
Sequence 
0- GAAGGAACUUCUGGUGUGAUAUG -23
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Mature sequence

Tca-Mir-2-P5e_3p
mirBase accessionMIMAT0018811
Sequence 
35- UAUCACAGCCAGUAGUUACCUACGA -60
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