MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-279-P1d

Family name MIR-279 (all species)
Seed GACUAGA
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-279e
Paralogues Tca-Mir-279-o3  Tca-Mir-279-P1c  Tca-Mir-279-P2  Tca-Mir-279-P3 
Orthologues Agr-Mir-279  Bko-Mir-279-o1  Bpl-Mir-279  Dan-Mir-279-P1  Dlo-Mir-279-P1  Dma-Mir-279-P1d  Dme-Mir-279-P1  Dmo-Mir-279-P1  Dpu-Mir-279-P1d  Dsi-Mir-279-P1  Dya-Mir-279-P1  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P1  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-o1  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) T. castaneum
Node of Origin (family) Protostomia
Genome context
(Tcas5.2)		 LG9: 11214-11274 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P1d)		 Mir-2-P5e LG9: 10977-11036 [-] Ensembl
Mir-9-P9c-v1 LG9: 11087-11146 [-] Ensembl
Mir-9-P9c-v2 LG9: 11088-11145 [-] Ensembl
Mir-279-P1d LG9: 11214-11274 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
ACCUUGCUUUCGGUGGAGCUCUCGGUGUAAGCCAGUGUUCAGUCUAUUGUUUCACAUUGGUUUCGAUUGUGACUAGAUCGAACACUCGCUUGCAACCUGGGUUUGGUCAGCGCUGCUACUU
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Structure
        10          20         30        40        50        60  
ACCUUGCUUUCGGUGGA--|   UC   -      C       A     UUGUU     UUGGU 
                   GCUC  GGU GUAAGC AGUGUUC GUCUA     UCACA     \
                   UGGG  CCA CGUUCG UCACAAG UAGAU     AGUGU     U
UUCAUCGUCGCGACUGGUU^   U-   A      C       C     C----     UAGCU 
 .       110       100         90        80            70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-279-P1d_5p*
mirBase accessionMIMAT0018816
Sequence 
0- GCCAGUGUUCAGUCUAUUGUUUCACA -26
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Mature sequence

Tca-Mir-279-P1d_3p
mirBase accessionMIMAT0018817
Sequence 
39- UGACUAGAUCGAACACUCGCUU -61
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