MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-279-P3

Family name MIR-279 (all species)
Seed GGCGAUU
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-279d
Paralogues Tca-Mir-279-o3  Tca-Mir-279-P1c  Tca-Mir-279-P1d  Tca-Mir-279-P2 
Orthologues Aae-Mir-279-P3  Aga-Mir-279-P3  Agr-Mir-279  Bge-Mir-279-P3  Bpl-Mir-279  Dan-Mir-279-P3  Dlo-Mir-279-P3  Dma-Mir-279-P3  Dme-Mir-279-P3  Dmo-Mir-279-P3  Dpu-Mir-279-P3  Dsi-Mir-279-P3  Dya-Mir-279-P3  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P3  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-P3  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Protostomia
Genome context
(Tcas5.2)		 LG7: 8213507-8213566 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P3)		 Mir-279-P3 LG7: 8213507-8213566 [-] Ensembl
Mir-279-P2 LG7: 8213635-8213695 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGGCCCCAAAAACCAAUGAAAACACUGUGUUGGCGAUUGUGGGUUUAGUCCACGUUUUAGUAAACCGUGACUAGAUCCAUACUCGUCUAUAGAGGUUUUUAGCACGACUUGGGCCCCACA
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Structure
        10           20        30        40        50          
UGGCCCCAAAAACCAAU---|     A  G   U     U             C   UUUUA 
                    GAAAAC CU UGU GGCGA UGUGGGUUUAGUC ACG     \
                    UUUUUG GA AUA CUGCU AUACCUAGAUCAG UGC     G
ACACCCCGGGUUCAGCACGA^     -  G   U     C             -   CAAAU 
.       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-279-P3_5p
mirBase accessionMIMAT0018788
Sequence 
0- UGGCGAUUGUGGGUUUAGUCCACG -24
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Co-mature sequence

Tca-Mir-279-P3_3p
mirBase accessionMIMAT0018789
Sequence 
37- UGACUAGAUCCAUACUCGUCUAU -60
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