MirGeneDB ID | Gpa-Mir-279-P3 |
Family name |
MIR-279 (all species) |
Seed |
GACUAGA |
Species |
Tsetse fly (Glossina pallidipes) |
MiRBase ID |
|
Paralogues |
Gpa-Mir-279-P1
Gpa-Mir-279-P2
|
Orthologues |
Aae-Mir-279-P3
Aga-Mir-279-P3
Agr-Mir-279
Bge-Mir-279-P3
Bpl-Mir-279
Dan-Mir-279-P3
Dlo-Mir-279-P3
Dma-Mir-279-P3
Dme-Mir-279-P3
Dmo-Mir-279-P3
Dpu-Mir-279-P3
Dsi-Mir-279-P3
Dya-Mir-279-P3
Eba-Mir-279
Egr-Mir-279
Esc-Mir-279
Gsa-Mir-279
Gsp-Mir-279
Hme-Mir-279-P3
Hru-Mir-279
Isc-Mir-279
Lgi-Mir-279
Lhy-Mir-279
Llo-Mir-279
Mgi-Mir-279
Mom-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
Pau-Mir-279
Pcr-Mir-279
Pve-Mir-279
Rph-Mir-279
Sma-Mir-279
Sne-Mir-279
Tca-Mir-279-o3
Tca-Mir-279-P3
|
Node of Origin (locus) |
Pancrustacea
|
Node of Origin (family) |
Protostomia
|
Genome context (GpalI1) |
Scaffold54: 1375135-1375199 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGUGAUCUCUUCGCUGACUCUAUUUUGUCGGCGAACAUGGAUCUAGUGCACGGUUUAUUCAUAAUCAAGUUCGUGACUAGAUUUCAUGCUCGUCUAUUAAGUUGGGUCAACACAACACACAGUAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GGUGAUCUCUUCGCUGA-- U U C A -| G GUUUAUUCA
CUC AUUU GU GGCGA CAUG GAUCUAGU CACG \
GGG UGAA UA CUGCU GUAC UUAGAUCA GUGC U
UAUGACACACAACACAACU U U U C U^ - UUGAACUAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut -1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Gpa-Mir-279-P3_5p* |
mirBase accession | None |
Sequence |
0- GCGAACAUGGAUCUAGUGCACG -22
Get sequence
|
Mature sequence |
Gpa-Mir-279-P3_3p |
mirBase accession | None |
Sequence |
43- UGACUAGAUUUCAUGCUCGUCU -65
Get sequence
|