Mir-279-P3

MirGeneDB ID

Bge-Mir-279-P3

Family name

MIR-279 (all species)

Seed

GACUAGA

Species

Cockroach (Blattella germanica)

MiRBase ID

Paralogues

Bge-Mir-279-o5 Bge-Mir-279-o6 Bge-Mir-279-o7 Bge-Mir-279-P2

Orthologues

Aae-Mir-279-P3 Aga-Mir-279-P3 Agr-Mir-279 Bpl-Mir-279 Dan-Mir-279-P3 Dlo-Mir-279-P3 Dma-Mir-279-P3 Dme-Mir-279-P3 Dmo-Mir-279-P3 Dpu-Mir-279-P3 Dsi-Mir-279-P3 Dya-Mir-279-P3 Eba-Mir-279 Egr-Mir-279 Esc-Mir-279 Gpa-Mir-279-P3 Gsa-Mir-279 Gsp-Mir-279 Hme-Mir-279-P3 Hru-Mir-279 Isc-Mir-279 Lgi-Mir-279 Lhy-Mir-279 Llo-Mir-279 Mgi-Mir-279 Mom-Mir-279 Npo-Mir-279 Obi-Mir-279 Ovu-Mir-279 Pau-Mir-279 Pcr-Mir-279 Pve-Mir-279 Rph-Mir-279 Sma-Mir-279 Sne-Mir-279 Tca-Mir-279-o3 Tca-Mir-279-P3

Node of Origin (locus)

Pancrustacea

Node of Origin (family)

Protostomia

Genome context
(Bger_2.0)

KZ614992.1: 536335-536392 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UUGCUUCAUGUGAAACCCUUGGUUUCUGUAGGCGGGUCUGGGUCUGGAUUACGCAAUUUUAAGACGUGACUAGAUCCAUACUCGUCUAUAAUAAUCAGGAAGAUCGGCUUAUGAUUUU

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Structure

        10          20        30        40        50         
UUGCUUCAUGUGAAACC--|      UC           C         A     CAAUU 
                   CUUGGUU  UGUAGGCGGGU UGGGUCUGG UUACG     \
                   GGACUAA  AUAUCUGCUCA ACCUAGAUC AGUGC     U
UUUUAGUAUUCGGCUAGAA^      UA           U         -     AGAAU 
      110       100        90        80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Co	Co	Di	Di	Eg	Eg	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Ny	Ny	Ny	Ny	Ny	Ny	Ny	Ny	Ov

Star sequence

Bge-Mir-279-P3_5p*

mirBase accession

None

Sequence

0- GGCGGGUCUGGGUCUGGAUUACG -23

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Mature sequence

Bge-Mir-279-P3_3p

mirBase accession

None

Sequence

36- UGACUAGAUCCAUACUCGUCUA -58

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