MirGeneDB 3.0

MirGeneDB ID

Tca-Mir-279-o3

Family name MIR-279 (all species)
Seed GACUAGA
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-279b
Paralogues Tca-Mir-279-P1c  Tca-Mir-279-P1d  Tca-Mir-279-P2  Tca-Mir-279-P3 
Orthologues Aae-Mir-279-P3  Aga-Mir-279-P3  Agr-Mir-279  Bge-Mir-279-P3  Bpl-Mir-279  Dan-Mir-279-P3  Dlo-Mir-279-P3  Dma-Mir-279-P3  Dme-Mir-279-P3  Dmo-Mir-279-P3  Dpu-Mir-279-P3  Dsi-Mir-279-P3  Dya-Mir-279-P3  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P3  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-P3  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) T. castaneum
Node of Origin (family) Protostomia
Genome context
(Tcas5.2)
LG5: 444013-444072 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGACAAAGCGGUAGUUAUCCUAAAGUUUUUGAUGGGUGAGGGUUUGGUGCAUGUUUUAUUUUAAUCAUGACUAGAUCCACACUCAUCCAAAAAUUUGGUGUCCUCAUCUGGAAAAAUUAC
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Structure
        10           20        30        40        50         
AGACAAAGCGGUAGUUAUC---|    G    U        A         G    UUUUA 
                      CUAAA UUUU GAUGGGUG GGGUUUGGU CAUG     U
                      GGUUU AAAA CUACUCAC CCUAGAUCA GUAC     U
CAUUAAAAAGGUCUACUCCUGU^    A    C        A         -    UAAUU 
.       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-279-o3_5p*

mirBase accessionMIMAT0019181
Sequence
0- GAUGGGUGAGGGUUUGGUGCAUG -23
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Mature sequence

Tca-Mir-279-o3_3p

mirBase accessionMIMAT0010201
Sequence
37- UGACUAGAUCCACACUCAUCCAA -60
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