MirGeneDB ID | Tca-Mir-279-o3 |
Family name |
MIR-279 (all species) |
Seed |
GACUAGA |
Species |
Red flour beetle (Tribolium castaneum) |
MiRBase ID |
tca-mir-279b
|
Paralogues |
Tca-Mir-279-P1c
Tca-Mir-279-P1d
Tca-Mir-279-P2
Tca-Mir-279-P3
|
Orthologues |
Aae-Mir-279-P3
Aga-Mir-279-P3
Agr-Mir-279
Bge-Mir-279-P3
Bpl-Mir-279
Dan-Mir-279-P3
Dlo-Mir-279-P3
Dma-Mir-279-P3
Dme-Mir-279-P3
Dmo-Mir-279-P3
Dpu-Mir-279-P3
Dsi-Mir-279-P3
Dya-Mir-279-P3
Eba-Mir-279
Egr-Mir-279
Esc-Mir-279
Gpa-Mir-279-P3
Gsa-Mir-279
Gsp-Mir-279
Hme-Mir-279-P3
Hru-Mir-279
Isc-Mir-279
Lgi-Mir-279
Lhy-Mir-279
Llo-Mir-279
Mgi-Mir-279
Mom-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
Pau-Mir-279
Pcr-Mir-279
Pve-Mir-279
Rph-Mir-279
Sma-Mir-279
Sne-Mir-279
|
Node of Origin (locus) |
T. castaneum
|
Node of Origin (family) |
Protostomia
|
Genome context (Tcas5.2) |
LG5: 444013-444072 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGACAAAGCGGUAGUUAUCCUAAAGUUUUUGAUGGGUGAGGGUUUGGUGCAUGUUUUAUUUUAAUCAUGACUAGAUCCACACUCAUCCAAAAAUUUGGUGUCCUCAUCUGGAAAAAUUAC
Get precursor sequence
|
Structure | 10 20 30 40 50
AGACAAAGCGGUAGUUAUC---| G U A G UUUUA
CUAAA UUUU GAUGGGUG GGGUUUGGU CAUG U
GGUUU AAAA CUACUCAC CCUAGAUCA GUAC U
CAUUAAAAAGGUCUACUCCUGU^ A C A - UAAUU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Ad |
Ea |
Em |
Em |
Em |
Em |
Em |
Fe |
Fe |
Fe |
Fe |
Oo |
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Star sequence |
Tca-Mir-279-o3_5p* |
mirBase accession | MIMAT0019181 |
Sequence |
0- GAUGGGUGAGGGUUUGGUGCAUG -23
Get sequence
|
Mature sequence |
Tca-Mir-279-o3_3p |
mirBase accession | MIMAT0010201 |
Sequence |
37- UGACUAGAUCCACACUCAUCCAA -60
Get sequence
|