MirGeneDB ID | Dan-Mir-279-P3 |
Family name |
MIR-279 (all species) |
Seed |
GACUAGA |
Species |
Fruit fly (Drosophila ananassae) |
MiRBase ID |
|
Paralogues |
Dan-Mir-279-P1
Dan-Mir-279-P2
|
Orthologues |
Aae-Mir-279-P3
Aga-Mir-279-P3
Agr-Mir-279
Bge-Mir-279-P3
Bpl-Mir-279
Dlo-Mir-279-P3
Dma-Mir-279-P3
Dme-Mir-279-P3
Dmo-Mir-279-P3
Dpu-Mir-279-P3
Dsi-Mir-279-P3
Dya-Mir-279-P3
Eba-Mir-279
Egr-Mir-279
Esc-Mir-279
Gpa-Mir-279-P3
Gsa-Mir-279
Gsp-Mir-279
Hme-Mir-279-P3
Hru-Mir-279
Isc-Mir-279
Lgi-Mir-279
Lhy-Mir-279
Llo-Mir-279
Mgi-Mir-279
Mom-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
Pau-Mir-279
Pcr-Mir-279
Pve-Mir-279
Rph-Mir-279
Sma-Mir-279
Sne-Mir-279
Tca-Mir-279-o3
Tca-Mir-279-P3
|
Node of Origin (locus) |
Pancrustacea
|
Node of Origin (family) |
Protostomia
|
Genome context (Dana_caf1) |
scaffold_13340: 14198981-14199044 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUGGGGUCUUUUUCUGACUCUAUUUUGUCGGCGAACAUGGAUCUAGUGCACGGUGUUUCAUGAUUAAGUUCGUGACUAGAUUUCAUGCUCGUCUAUUAAGUUGGGUCAGCACACCAAAGAGUCG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUGGGGUCUUUUUCUGA-- U U C A -| G GUGUUUCA
CUC AUUU GU GGCGA CAUG GAUCUAGU CACG U
GGG UGAA UA CUGCU GUAC UUAGAUCA GUGC G
GCUGAGAAACCACACGACU U U U C U^ - UUGAAUUA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut -1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Dan-Mir-279-P3_5p* |
mirBase accession | None |
Sequence |
0- GCGAACAUGGAUCUAGUGCACG -22
Get sequence
|
Mature sequence |
Dan-Mir-279-P3_3p |
mirBase accession | None |
Sequence |
42- UGACUAGAUUUCAUGCUCGUCU -64
Get sequence
|