MirGeneDB 3.0
MirGeneDB ID

Dan-Mir-279-P2

Family name MIR-279 (all species)
Seed GACUAGA
Species Fruit fly (Drosophila ananassae)
MiRBase ID dan-mir-279
Paralogues Dan-Mir-279-P1  Dan-Mir-279-P3 
Orthologues Aae-Mir-279-P2  Aga-Mir-279-P2  Agr-Mir-279  Bge-Mir-279-P2  Bko-Mir-279-o2  Bpl-Mir-279  Dlo-Mir-279-P2  Dma-Mir-279-P2  Dme-Mir-279-P2  Dmo-Mir-279-P2  Dpu-Mir-279-P2  Dsi-Mir-279-P2  Dya-Mir-279-P2  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P2  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-o2  Hme-Mir-279-P2  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279  Tca-Mir-279-P2 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Protostomia
Genome context
(Dana_caf1)		 scaffold_13340: 14200323-14200386 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GAUACUAAUACUACUACUACUACUGUUUUUAGUGGGUGAGGGUCCAGUGUUUCACAUUGAUUUCUGUAUUUGUGACUAGAUCCACACUCAUUAAUAACGGUAGUUCAAUCAGCAAGGCCCACGU
Get precursor sequence
Structure
        10          20        30        40        50        60   
GAUACUAAUACUACUACU--|        U          A     C  UGUU     UUGAUU 
                    ACUACUGUU UUAGUGGGUG GGGUC AG    UCACA      U
                    UGAUGGCAA AAUUACUCAC CCUAG UC    AGUGU      C
UGCACCCGGAACGACUAACU^        U          A     A  ----     UUAUGU 
  120       110       100        90        80            70
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut +1 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Fe
Star sequence

Dan-Mir-279-P2_5p*
mirBase accessionNone
Sequence 
0- AGUGGGUGAGGGUCCAGUGUUUCACA -26
Get sequence
Mature sequence

Dan-Mir-279-P2_3p
mirBase accessionMIMAT0008454
Sequence 
42- UGACUAGAUCCACACUCAUUAA -64
Get sequence