MirGeneDB 3.0
MirGeneDB ID

Bko-Mir-279-o2

Family name MIR-279 (all species)
Seed GACUAGA
Species Monogonont Rotifer 2 (Brachionus koreanus)
MiRBase ID
Paralogues Bko-Mir-279-o1 
Orthologues Aae-Mir-279-P2  Aga-Mir-279-P2  Agr-Mir-279  Bge-Mir-279-P2  Bpl-Mir-279  Dan-Mir-279-P2  Dlo-Mir-279-P2  Dma-Mir-279-P2  Dme-Mir-279-P2  Dmo-Mir-279-P2  Dpu-Mir-279-P2  Dsi-Mir-279-P2  Dya-Mir-279-P2  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P2  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-o2  Hme-Mir-279-P2  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279  Tca-Mir-279-P2 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom)		 PJRA01000503.1: 192755-192815 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCAAUUCAGCUUAAAUAUAAUAACUGUCAGUGUGAAUGUAUUCAAGUCAAUUAGAAAAAAUAUUUUAUUGACUAGAGCAUUCACGCUUAUAGAUUAUAUUCAAUCUUCUCAGUCAAAGA
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Structure
        10            20        30        40        50        60 
UUUCAAUUCAGCUUAAA----|     AA    C           AU  A       UAGAAAA 
                     UAUAAU  CUGU AGUGUGAAUGU  UC AGUCAAU       \
                     AUAUUA  GAUA UCGCACUUACG  AG UCAGUUA       A
AGAAACUGACUCUUCUAACUU^     --    U           --  A       UUUUAUA 
 .       110       100          90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bk Bk Bk
Star sequence

Bko-Mir-279-o2_5p*
mirBase accessionNone
Sequence 
0- AGUGUGAAUGUAUUCAAGUCAAU -23
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Mature sequence

Bko-Mir-279-o2_3p
mirBase accessionNone
Sequence 
40- UGACUAGAGCAUUCACGCUUA -61
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