MirGeneDB ID | Bko-Mir-279-o2 |
Family name |
MIR-279 (all species) |
Seed |
GACUAGA |
Species |
Monogonont Rotifer 2 (Brachionus koreanus) |
MiRBase ID |
|
Paralogues |
Bko-Mir-279-o1
|
Orthologues |
Aae-Mir-279-P2
Aga-Mir-279-P2
Agr-Mir-279
Bge-Mir-279-P2
Bpl-Mir-279
Dan-Mir-279-P2
Dlo-Mir-279-P2
Dma-Mir-279-P2
Dme-Mir-279-P2
Dmo-Mir-279-P2
Dpu-Mir-279-P2
Dsi-Mir-279-P2
Dya-Mir-279-P2
Eba-Mir-279
Egr-Mir-279
Esc-Mir-279
Gpa-Mir-279-P2
Gsa-Mir-279
Gsp-Mir-279
Hme-Mir-279-o2
Hme-Mir-279-P2
Hru-Mir-279
Isc-Mir-279
Lgi-Mir-279
Lhy-Mir-279
Llo-Mir-279
Mgi-Mir-279
Mom-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
Pau-Mir-279
Pcr-Mir-279
Pve-Mir-279
Rph-Mir-279
Sma-Mir-279
Sne-Mir-279
Tca-Mir-279-P2
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Protostomia
|
Genome context (Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom) |
PJRA01000503.1: 192755-192815 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUCAAUUCAGCUUAAAUAUAAUAACUGUCAGUGUGAAUGUAUUCAAGUCAAUUAGAAAAAAUAUUUUAUUGACUAGAGCAUUCACGCUUAUAGAUUAUAUUCAAUCUUCUCAGUCAAAGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUUCAAUUCAGCUUAAA----| AA C AU A UAGAAAA
UAUAAU CUGU AGUGUGAAUGU UC AGUCAAU \
AUAUUA GAUA UCGCACUUACG AG UCAGUUA A
AGAAACUGACUCUUCUAACUU^ -- U -- A UUUUAUA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Bko-Mir-279-o2_5p* |
mirBase accession | None |
Sequence |
0- AGUGUGAAUGUAUUCAAGUCAAU -23
Get sequence
|
Mature sequence |
Bko-Mir-279-o2_3p |
mirBase accession | None |
Sequence |
40- UGACUAGAGCAUUCACGCUUA -61
Get sequence
|