MirGeneDB 3.0
MirGeneDB ID

Bko-Mir-279-o1

Family name MIR-279 (all species)
Seed GACUAGA
Species Monogonont Rotifer 2 (Brachionus koreanus)
MiRBase ID
Paralogues Bko-Mir-279-o2 
Orthologues Aae-Mir-279-P1a  Aae-Mir-279-P1b1  Aae-Mir-279-P1b2  Aga-Mir-279-P1a  Aga-Mir-279-P1b  Agr-Mir-279  Bpl-Mir-279  Dan-Mir-279-P1  Dlo-Mir-279-P1  Dma-Mir-279-P1c  Dma-Mir-279-P1d  Dme-Mir-279-P1  Dmo-Mir-279-P1  Dpu-Mir-279-P1c  Dpu-Mir-279-P1d  Dsi-Mir-279-P1  Dya-Mir-279-P1  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P1  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-o1  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279  Tca-Mir-279-P1c  Tca-Mir-279-P1d 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom)		 PJRA01000005.1: 3913347-3913411 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UCUUCAAUGCAUCUUAAAUAUAAUUGCUGUCAGUGUGAAUGUAUUCAAGUCAAUUAGAAAAAAAAUAUUUUAUUGACUAGAGCAUUCACGCUUAUAGAUUAUAUUCAAUCUUCUCAAUCAAAGCA
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Structure
        10            20        30        40        50        60   
UCUUCAAUGCAUCUUAA----|      UG    C           AU  A       UAGAAAAA 
                     AUAUAAU  CUGU AGUGUGAAUGU  UC AGUCAAU        \
                     UAUAUUA  GAUA UCGCACUUACG  AG UCAGUUA        A
ACGAAACUAACUCUUCUAACU^      --    U           --  A       UUUUAUAA 
   120       110       100          90          80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Bk Bk Bk
Star sequence

Bko-Mir-279-o1_5p*
mirBase accessionNone
Sequence 
0- CAGUGUGAAUGUAUUCAAGUCAAU -24
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Mature sequence

Bko-Mir-279-o1_3p
mirBase accessionNone
Sequence 
43- UGACUAGAGCAUUCACGCUUAU -65
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