MirGeneDB 3.0

MirGeneDB ID

Aga-Mir-279-P1b

Family name MIR-279 (all species)
Seed GACUAGA
Species African malaria mosquito (Anopheles gambiae)
MiRBase ID aga-mir-286b
Paralogues Aga-Mir-279-P1a  Aga-Mir-279-P2  Aga-Mir-279-P3  Aga-Mir-279-P25 
Orthologues Aae-Mir-279-P1b1  Aae-Mir-279-P1b2  Agr-Mir-279  Bko-Mir-279-o1  Bpl-Mir-279  Dan-Mir-279-P1  Dlo-Mir-279-P1  Dme-Mir-279-P1  Dmo-Mir-279-P1  Dsi-Mir-279-P1  Dya-Mir-279-P1  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P1  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-o1  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) Culicidae
Node of Origin (family) Protostomia
Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)
NC_064601.1: 67178504-67178570 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P1b)
Mir-3-o1 NC_064601.1: 67177915-67177979 [-] Ensembl
Mir-2-P5a2 NC_064601.1: 67178094-67178150 [-] Ensembl
Mir-279-P1b NC_064601.1: 67178504-67178570 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CAUUGUUUCACGUCCCGGCUCACGGCUUAGGGCGAAUGUCGGAGUAGUCGCUUGUGAUUGAAUUGACAAAAAGUGACUAGACCGAACACUCGUAUCCUAAAUCGUUGAAAAAAUCGUCAGUGCAAAA
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Structure
        10        20         30           40        50        60  
CAUUGUUUCACGUCCCGGC  -   GC     --    A  -|   AG        UGUGAUUGA 
                   UC ACG  UUAGG  GCGA UG UCGG  UAGUCGCU         \
                   AG UGC  AAUCC  UGCU AC AGCC  AUCAGUGA         A
AAAACGUGACUGCUAAAAA  U   UA     UA    C  A^   AG        AAAACAGUU 
     120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ab Ab He He Mi Mi Ov Ov Ov
Star sequence

Aga-Mir-279-P1b_5p* (predicted)

mirBase accessionMIMAT0041566
Sequence
0- GGCGAAUGUCGGAGUAGUCGCU -22
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Mature sequence

Aga-Mir-279-P1b_3p

mirBase accessionMIMAT0041567
Sequence
43- UGACUAGACCGAACACUCGUAUCC -67
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