MirGeneDB 3.0
MirGeneDB ID

Gpa-Mir-279-P1

Family name MIR-279 (all species)
Seed GACUAGA
Species Tsetse fly (Glossina pallidipes)
MiRBase ID
Paralogues Gpa-Mir-279-P2  Gpa-Mir-279-P3 
Orthologues Aae-Mir-279-P1a  Aae-Mir-279-P1b1  Aae-Mir-279-P1b2  Aga-Mir-279-P1a  Aga-Mir-279-P1b  Agr-Mir-279  Bko-Mir-279-o1  Bpl-Mir-279  Dan-Mir-279-P1  Dlo-Mir-279-P1  Dma-Mir-279-P1c  Dma-Mir-279-P1d  Dme-Mir-279-P1  Dmo-Mir-279-P1  Dpu-Mir-279-P1c  Dpu-Mir-279-P1d  Dsi-Mir-279-P1  Dya-Mir-279-P1  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-o1  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279  Tca-Mir-279-P1c  Tca-Mir-279-P1d 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Protostomia
Genome context
(GpalI1)		 Scaffold26: 90609-90682 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUUUUUGUUAUUACUUUUAAAAUUAAACCGCGAUUGUCGGCUUAGUCUCUCUUUCGUUUUAUCAUAUUUCCAUAUUGAGUGACUAGACCGAACACUCGCGCUAUAAUUUUAAAAUAAUCAUCAGUAGUGACU
Get precursor sequence
Structure
        10          20        30         40        50        60      
UUUUUUUUGUUAUUACU--          AAC     U  -|   CU     U  CUUUCGUUUUAUC 
                   UUUAAAAUUA   CGCGA UG UCGG  UAGUC CU             \
                   AAAUUUUAAU   GCGCU AC AGCC  AUCAG GA             A
UCAGUGAUGACUACUAAUA          AUC     C  A^   AG     U  GUUAUACCUUUAU 
  130       120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl
Star sequence

Gpa-Mir-279-P1_5p*
mirBase accessionNone
Sequence 
0- CGCGAUUGUCGGCUUAGUCUCU -22
Get sequence
Mature sequence

Gpa-Mir-279-P1_3p
mirBase accessionNone
Sequence 
51- UGACUAGACCGAACACUCGCGCU -74
Get sequence